| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_5418 |
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| Symbol | |
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| ID | 8329620 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Actinosynnema mirum DSM 43827 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013093 |
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| Strand | - |
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| Start bp | 6433673 |
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| End bp | 6436855 |
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| Gene Length | 3183 bp |
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| Protein Length | 1060 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 644945855 |
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| Product | putative sensor with HAMP domain |
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| Protein accession | YP_003103083 |
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| Protein GI | 256379423 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGCGCGGTC ACGACGACCA CGCCTCCGGT GAAGGACGAC CGGAGCGAAC TCAACTCGAC
GCGGGTGCTC AGGGCAAAGC GCCCGACCCA GGGCCCGGCA CCACGACCAC GCCCACCGCG
GGCCGGGGCA TCTCCCGGTG GCGGCTGCGC AACTGGAAGC TGCGCAGCAA GCTCGTGGTG
GTGCTCCTGG TGCCCGCGAT GAGCACGCTG GCCCTCGCGG GCCTGCGGCT CACCACCCAG
CTCGACGACG TCGAGCTGTA CGGCAAGGTG CAGCGCGAGC TGCAATTATC CGCCCAAGCA
GCCGCCGTGG GGGACGCGCT GCAATTAGAG CGCGACGCGG CCGTCGGCTA CGTCGCGGCA
GGTCGCAAGA CGAACCCCGA CGCCACGGCG CGCGTCGGCG AGCTCAACAC CAGATCGGGC
AAGGTCGACG CGGAGGTCAT GCGGCTGCGC GACGTCGGCG CGGCCACCGG CGACATCGAC
GACACCGTCC GCACCGCGTA CGAGAAGTCG CTCCAGTCGC TCGACGGCCT CAACTCGCTG
CGCAACACCG TCCTGGAGAG CCAGTACCCG GACGCCTCCG TCGCCAGCGC CTACGGGCAG
CTGCTCGGCA CCCTGCTCCA GGTCCACCGC GCGACCTCCA GCAGCCTCAG CAACGAGCAC
CTCACCCCGC TGGTCGGCGC CAACCTCGCG CTGTACGCCG CGAAGGAGCA GCTCGCCCAG
CAGAACTCGA TCCTGATCTC CGCGGCGAAC CGCAGCGAGT TCGGCCCCAA CCAGGCCAAC
GCGCTGCGCG GCGCGCAGTC CAAGCTGGAC TCCGCGATCA CCGACTTCAC CAACGTCGCG
AGCCAGGACA ACCGGCAGAA CTACCAGGAC ACCGTGTCCG GCACGGCCGT CGACGCCCGC
AACCGGCTGG TGACGCTCGC GCTGGTGCAG AACGACAACG GCAAGGCCAT CTCCTTCAAC
GAGAACGACG CGCTGCGCGT CGGCGAGGAC ACCGCCGCCC TGCTGCGCCA GGTCTCGCTC
GACATCGAGG ACCAGGCCCA GCGGGAGGCC GTCCGGCTCA CCGACGAGGC CAACGCGCTC
GCCTGGCGCG ACGGCGCGCT CGTGGCCGCC GCGCTGATCA TCGCGTTCGC GCTCATGGCG
GTCGTCGCCA CCTCGATGCT GACCCCGCTG CGGGTGCTGC GCCGCACCGC GCTCGACGTG
GCCCGCAACC GCCTCCCGGA CGCGATCAAG CGCATCCGCA CCCACCGCGA CCCCGAGCGG
GCCGCGGAGG AGTCCCTGGT GCCGGTGCCG ATCCACACCA CCGAGGAGGT CGGCCAGGTG
GCCCGCGCGT TCGACGCGGT CCAGCGCGAG GCCATCCGCC TCGCGGTCGA GCAGGTGGCG
CTGCGCGCCA ACGTCAACGA CATGTTCATC AACCTCTCCC GGCGCAGCCA GGCGCTCGTG
GAGCGGCAGA TCACCGTCAT CGACCGGCTG GAGCAGGACG AGCAGGACCC CGACCAGCTG
GCGAGCCTGT TCGAGCTGGA CCACCTGGCC ACCCAGATGC GCCGCAACAG CGAGAACCTG
CTCGTGCTCT CCGGCACCAC GGTCACCCGC CGCGTCACCA GGCCGGTGCC GATCACGGAG
GTGCTCGGCG CCGCGGTGTC CGAGGTCGAG AAGTACGCCC GCGTGCACAT CGCGCCCGCG
CCCGACCTGC GCGTCCAGGG CCGCGTGGTC AACGACCTCG CGCACCTGAT CGCCGAGCTG
CTGGACAACG CGACCGCGTT CTCCAAGCCC AGCACCAAGG TGACCGTGCG GGCCATAGAG
ACCCGGCGCG GCGAGGTGTC CATCCGCATC CACGACCGCG GCGTCGGCAT GCAGGAGCAG
GACGTCGTCG AGGCGAACCT GAAGCTGTCC GAGCCGCCCG AGGTCGACGT GTCGGTGGCC
CGCGAGATGG GCCTGTACGT GGTCGGCCAG CTGGCCAAGC GGCACGAGAT CCACGTGTCG
CTGCGCAACA ACGACGACAT CGAGGGCGGT GTCACCGCGC AGGTGCTGCT GCCCGCGGGC
CTGCTGCACC GGGGCCCGGA CCCGCAGGGC GGCGGCGGTC GGCAGAGCCT GCCGCTGGGC
AGGCCCGGCG TCCTCGCGCT GGCCGACCCG CCGGAGGTGG AGGAGACCGG GGCCGTCGCG
CTGTCCGGCC TGCCCAAGTG GAGCCCGGAC CAGATGCCGT CCGCGTTCGG CGAGGCCGCG
CCGGAGCACG CGTTCCGGGG CAGGCCGGGG CAGAACGGGG TGACGCCGCA GGAGACCACG
TTCTCCGGCA GCTCGTTCTC CGGCACCTCG TTCGACTCGT TCGAGGACAC CGGCGCGCAC
CGGCCGGTCG AGCACAACTC GTCCGCCGAC GGCCTGTTCA CCGCGACCGT CACCGAGACC
GCGCCGCCGC GCGCGGGCGA CGACATCGAC TACTCCTACC CGCCCGCGCA GCAGGGGCAG
CAGCAGCGCG CCGTGCCCGC CCCCGCGCCC GCGGTGGTGG AGGACGACGC GTCCACCCAG
CGCCTGCCGA TCTACGAAGA CGTGCTGTCC CGCTGGTTCC AGGGCGGCGA CGAGGACTCC
GGGGAGGCGC GGGTGCGGGG CGAGGGCAGG ACGCGCGGCG AGCACGCGCT CCCCGACGAG
CCGGAGCCGC AGGACCACGA CGTCGTGCTC GACGGCGGGT CCGACGCGGA GCGGACCGTG
TTCGCCGAGC CGGTCGGGGA CGCCCAGCCC GACCAGGCCC TCGCGTCCGC GCCTGCCTCC
GCGTCCGGGC TCGGCGGCCT GCCCAAGCGG GAGCCCGCCC CCTCCAAGGT GTCCGCCGCC
GCGGCCAACT GGGGCTCCTC CGACGACAAC TGGTCGACGG CGAGCAAGGT GCTCAAGTCC
GCCGTCGACG AGTCCACCAC GGCGGGCCTG CCCAAGCGCG TCCCCAAGGC GCGCCTGATG
CCCGGTTCGC TCTCCACCGG CTCGTCCACC ACCGCGACCC AGGCGACCGT GCGCGCGGAA
GGCCGGACCG GCCCGTCCGG CGGGGTCGCC ACCGCGCAGG GACCCCGGTC CGCCGACCGG
CTGCGCCAGC GGTTCGCCAC CTACCAGCGC GGCCTGCAGA TGGGCCGCGA CAACAACCAG
GACGATGACA GCCTGCCCTG GGAGGGCCTG TCGTTCGGCA ACTCAGACAA GGAGCAGAAG
TGA
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| Protein sequence | MRGHDDHASG EGRPERTQLD AGAQGKAPDP GPGTTTTPTA GRGISRWRLR NWKLRSKLVV
VLLVPAMSTL ALAGLRLTTQ LDDVELYGKV QRELQLSAQA AAVGDALQLE RDAAVGYVAA
GRKTNPDATA RVGELNTRSG KVDAEVMRLR DVGAATGDID DTVRTAYEKS LQSLDGLNSL
RNTVLESQYP DASVASAYGQ LLGTLLQVHR ATSSSLSNEH LTPLVGANLA LYAAKEQLAQ
QNSILISAAN RSEFGPNQAN ALRGAQSKLD SAITDFTNVA SQDNRQNYQD TVSGTAVDAR
NRLVTLALVQ NDNGKAISFN ENDALRVGED TAALLRQVSL DIEDQAQREA VRLTDEANAL
AWRDGALVAA ALIIAFALMA VVATSMLTPL RVLRRTALDV ARNRLPDAIK RIRTHRDPER
AAEESLVPVP IHTTEEVGQV ARAFDAVQRE AIRLAVEQVA LRANVNDMFI NLSRRSQALV
ERQITVIDRL EQDEQDPDQL ASLFELDHLA TQMRRNSENL LVLSGTTVTR RVTRPVPITE
VLGAAVSEVE KYARVHIAPA PDLRVQGRVV NDLAHLIAEL LDNATAFSKP STKVTVRAIE
TRRGEVSIRI HDRGVGMQEQ DVVEANLKLS EPPEVDVSVA REMGLYVVGQ LAKRHEIHVS
LRNNDDIEGG VTAQVLLPAG LLHRGPDPQG GGGRQSLPLG RPGVLALADP PEVEETGAVA
LSGLPKWSPD QMPSAFGEAA PEHAFRGRPG QNGVTPQETT FSGSSFSGTS FDSFEDTGAH
RPVEHNSSAD GLFTATVTET APPRAGDDID YSYPPAQQGQ QQRAVPAPAP AVVEDDASTQ
RLPIYEDVLS RWFQGGDEDS GEARVRGEGR TRGEHALPDE PEPQDHDVVL DGGSDAERTV
FAEPVGDAQP DQALASAPAS ASGLGGLPKR EPAPSKVSAA AANWGSSDDN WSTASKVLKS
AVDESTTAGL PKRVPKARLM PGSLSTGSST TATQATVRAE GRTGPSGGVA TAQGPRSADR
LRQRFATYQR GLQMGRDNNQ DDDSLPWEGL SFGNSDKEQK
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