| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_5415 |
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| Symbol | |
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| ID | 8329617 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Actinosynnema mirum DSM 43827 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013093 |
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| Strand | + |
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| Start bp | 6430567 |
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| End bp | 6432522 |
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| Gene Length | 1956 bp |
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| Protein Length | 651 aa |
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| Translation table | 11 |
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| GC content | 76% |
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| IMG OID | 644945852 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_003103080 |
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| Protein GI | 256379420 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCCAAC CCTCAAGGCC CGTCCCCCTG ACGGGCAGCG CGCCCCCCGC GGGCGCCCCC
TCCGTGGGCG AGGTCGCCGA GCGCTGGACC GGCGAGCTGG TCCGCACCGC CTACAGCCCG
ATCGCCCGCG CGAAGGTGCG CCGCAAGCTC GTCCAGCACG TCGGCCTGCT CGACGAGCTG
CTCGCCTCGC CCGACCTGCC CGCCGACGAG GCGGTCGCGG TCGGCGAGTG GCTGGTGACC
GCGCGGTTCA CCGGCGACAC GAGCCTGGGC AGCTCCCTGG AGGTGCTCGG CCGCGCCCTG
GCCGCGCGCG CACCCGACTC GCCCGAGCGG GTCGCCGAGC TGCTCGGCGC CGTCGCGGGC
GGGTACGCCG CCAGGCTGCG CCTGCAGGTG TTCGGCGAGC ACGAGGAGGT CAGGGCCTCG
CTGCTGGCCG CGCTGGAGCG CACGAGGGTC GAGCTGCACG ACAGCGAGGC CCGGTTCCGA
CAGGTCTTCG CGCACTCCGC CGCCGGGATC GCGGTGTTCG ACGCGGACGG CGAGCTGCTG
GAGAGCAACG CCGCGCTGAC CGGGATGCTC GGCCCCGACT TCGGCGGGCA GGACCTGAGC
GGGCTGCGCG GCGAGTGGGC CGCGATGGCG GTGCGCGGCG AGGACGTCTC GCACGTCGAG
CAGATGTTCC TGGACCCCAG CGGCGATCCG CTGTGGACGA ACGTGGCGCT GTCCGTGGTG
GCGGGCGAGG ACGGCGGCCC GCGCTACCAC CTGGCGGTGG TGGAGGACGT CACCGAGCAG
CGGATGCTGC GCGAGTACCT GCGCCACCAG GCGCTGCACG ACGTGCTGAC CGGGCTGCCG
AACCGGCAGA GCTTCCTGCC CAAGCTGGAG GAGGTGCTGG GGCGGCCCGG CTCGATCACC
CTGTGCTACC TGGACGTGGA CAGCGTCGCG ATCGTCAACG ACGGCCTCGG CTACGAGTAC
GGCGACGAGC TGCTCAAGGT CGTGGCGGGC CGGTTGACGT CCGTGGCCGA GGGGCTGACG
GCGACCGTGG CCAGGATCGG CGGCGACGAG TTCGTCGTGC TGGTCGAGGA CGGCCCTGGG
ACGCCCAGCA TCTCCGAGCT GGCCGCGATG ATCGACGGCG CGCTCGCCGA GCCGGTGCGG
CTGGCCGGGC ACGCGGTGGG CGTGTCGGCG GGCATGGGCT TCGTGCGCAC GGCCGCGCGC
GGGCTCGACG CGATGGCGCT GCTGCGGCAG GCGCACAGCA CGCTGCGCCG CGCCGAGACC
GGCGGCAAGG GCCAGTGGGG CATCTACGAC GCCGGGCACG ACGAGAAGGA GCGGTCGCGG
CTGTCGCTGA TCGCCGCCAT GCCGGGCGCG CTGGAGACCG GCGAGATCGC GATCGACTAC
CGGGACGTGC GCGACCGGTC CGGTGAGCGG GTCGCGCTGG CGGCCAGGCT GCGCTGGGAG
CACGACGGCA CGACCGTCGG GCACGACGAC TGCCTGCGCT ACGCCGACGA GCTGGGCCTG
GCGGGCGCGC TGGCCGAGTG GCTGCTGGAC GAGGCCTGCT CGTTCGCGTC GCTGGAGGCG
CTGCCGGTGC TGGTGCGGCT GTCGGCCGAC CAGTCCCGCG ACCCGGACCT GAGCGGCCTG
GTCGGCGGCG CGGTGCGCGG GTGGGCGCTG GCCGAGGGGC AGCTGTGGCT GAGCCTGGAC
TCGGCGGCGG CCGGGCTGGG CGAGGAGGTC GAGGAGAACC TGAGCGTGCT GGCCGACATG
GGCGTGCGGC GGCTGCTGCA CGGGTGCGCG CTCGGCCAGG GCGAGCTGGC GCTGCTGGAG
CGGCAGCGCC CGCACGGCGT GGAACCGGCG GGCGCGCCGG ACGGCTCGGA GCTGGCCCGC
AGGGCGCGGG AGGCGCTGCT GCCGATGGTG CGCGGCGCCG GGGCGCTGGT GCTGTCCGAG
CGCGCGGACG ACGACGCGGA CCTCGTGGTG GGCTGA
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| Protein sequence | MTQPSRPVPL TGSAPPAGAP SVGEVAERWT GELVRTAYSP IARAKVRRKL VQHVGLLDEL
LASPDLPADE AVAVGEWLVT ARFTGDTSLG SSLEVLGRAL AARAPDSPER VAELLGAVAG
GYAARLRLQV FGEHEEVRAS LLAALERTRV ELHDSEARFR QVFAHSAAGI AVFDADGELL
ESNAALTGML GPDFGGQDLS GLRGEWAAMA VRGEDVSHVE QMFLDPSGDP LWTNVALSVV
AGEDGGPRYH LAVVEDVTEQ RMLREYLRHQ ALHDVLTGLP NRQSFLPKLE EVLGRPGSIT
LCYLDVDSVA IVNDGLGYEY GDELLKVVAG RLTSVAEGLT ATVARIGGDE FVVLVEDGPG
TPSISELAAM IDGALAEPVR LAGHAVGVSA GMGFVRTAAR GLDAMALLRQ AHSTLRRAET
GGKGQWGIYD AGHDEKERSR LSLIAAMPGA LETGEIAIDY RDVRDRSGER VALAARLRWE
HDGTTVGHDD CLRYADELGL AGALAEWLLD EACSFASLEA LPVLVRLSAD QSRDPDLSGL
VGGAVRGWAL AEGQLWLSLD SAAAGLGEEV EENLSVLADM GVRRLLHGCA LGQGELALLE
RQRPHGVEPA GAPDGSELAR RAREALLPMV RGAGALVLSE RADDDADLVV G
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