Gene Amir_5326 details

Gene Information

• Locus tag: Amir_5326
• ID: 8329528
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Actinosynnema mirum DSM 43827
• Kingdom: Bacteria
• Replicon accession: NC_013093
• Strand: +
• Start bp: 6336478
• End bp: 6338442
• Gene Length: 1965 bp
• Protein Length: 654 aa
• Translation table: 11
• GC content: 75%
• IMG OID: 644945764
• Product: ABC transporter related
• Protein accession: YP_003102992
• Protein GI: 256379332
• COG category: [V] Defense mechanisms
• COG ID: [COG1132] ABC-type multidrug transport system, ATPase and permease components

Plasmid Coverage information

• Num covering plasmid clones: 21
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGACATGG AGACCACGGC CTGGCACTCG TTGCACCACG TCGCCAACGC GCGGCAGTCG 
AGCAAGCCGC TGTCGGCGGC GGCGCTGAGG CGGATCTGGC GGTTCGCCGA CGTGTCCCGG 
CCGAAGCTCG CGCAGTACCT GGTGGTCAGC GTGCTGGCCG CCGCGCTGGC GGTGCTCACG 
CCGGTGCTGG CCGGGCGGGT CGTGGAGGCG ATCGTGTCCG GCGGCACGAC CGGGTTCGTG 
GCGGGCCTCG CCGGGCTGAT CGCGGTGATC GCGCTCGTGG AGGCGGGGCT GGGGCTGCTC 
GCGCGGTGGC TGTCGGCGAG CCTGGGCGAG AACCTGATCC TGCGGCTGCG CACCGTCGTC 
TACGACCACG TGCAGCGGCT GCCGGTGGCG TTCTTCACCC GCACCCGCAC CGGGGCGCTG 
GTCAGCAGGC TCAACAACGA CGTGATCGGG GCGCAGCGGG CGTTCAGCGA CACGCTGTCC 
GGGGTCGTGG GCAACGTCGT CACGCTCGCG CTCACGCTCG CCGTGATGAT CGGCTTCTCC 
TGGCGGATCA CGCTGCTGGC GCTGGTGCTG CTGCCGGTGT TCGTGGTCCC GGCCCGGCGC 
ATGGGCTCCC GCCTGGCGTC GCTGGAGCTG GAGGCGGCCG GGCACAACGC GGCGATGGGC 
GACCGGATGA CGGAGCGGTT CTCGGCCCCC GGCGCGACGC TGGTGAAGCT GTTCGGCAGG 
CCCGAGCGCG AGTCGGCGGA GTTCGCGGAC CGGGCGCGGC GGGTGCGCGA CATCGGGGTG 
CGCAAGGCGA TGGCCACCAC GGTGTTCATG ACCGCGCTCA CGCTGGTGTC CGCGCTGGCC 
ACCGCGCTGG TGTACGGGCT CGGCGGCTAC TCGGCGCTGC GCGGCGAGCT GGACGCCGGG 
TCGGTGGTGT CGCTGGCGCT GCTGCTGACC AGGCTGTACG CGCCGCTGAC CGCGCTGGCC 
AACGCTCGGG TCGAGATGAT GAGCGCGCTG GTGTCGTTCG AGCGGGTGTT CGAGGTGCTG 
GACCTGGAGC CGCTGGTGGC GGAGAAGCCG GGCGCGGTGG CGATCCCGGA CGGGCCCGCG 
GCGGTGGAGT TCCGGGACGT GCGGTTCTCC TACCCGGCGG CGGACAAGGT GTCGCTGGCC 
TCGCTGGAGG AGGTCGCGGT GCTGGACTCG CGCGGCGGCG AGGAGGTGGT GCGCGGGGTG 
TCGTTCACGG CCGAGCCCGG GCAGCTGGTG GCGCTGGTGG GGTCGTCAGG CGCGGGGAAG 
TCGACCATCG CGTCCCTGCT GCCCCGGCTG CACGACGTGG ACTCGGGCGC GGTGCTGGTG 
TCCGGGGTGG ACGTGCGCGA CGCGACCTCG GCCTCGCTGC GCGAGAGCCT GGGCGTGGTG 
ACGCAGGACG GGCACCTGTT CCACGAGTCG GTGCGGGACA ACCTGCTGCT GGCCGCGCCG 
GGGGCGAGCG ACGAGCAGCT GTGGGACGCG CTGCGGCGGG CCAGGCTGGA CGGGCTGGTG 
GCGTCGCTGC CGGAGGGCCT GGACACGGTG GTGGGCGAGC GCGGCTACCG GCTGTCCGGC 
GGCGAGCGGC AGCGGCTGAC CATCGCCCGC GTCCTGCTGG CCCGCCCGCG CGTGGTGGTG 
CTGGACGAGG CGACCGCGCA CCTGGACTCG ACGTCGGAGG CGCAGGTCCA GGAGGCGCTC 
GGCGAGGCCC TGGCGGGCAG GACCGCGCTG GTGATCGCGC ACCGGCTGTC GACGATCCGG 
TCGGCGGACG TGATCCTGGT GGTGGAGGGC GGGCAGGTCG TGGAGCGCGG CACGCACGCG 
GAGCTGCTGG CGGCGGGCGG GCGGTACGAG CAGCTGCACC GGACGCAGTT CGCCGAGGAG 
GCCGCGGGGG AGGCTGCGGG TTCGGGGCGC GCGGGGGCTT CCGGGACCGC GGGGACCTCC 
GGAGCGGCCG GTGGCGGTGC GGGACGGGCG GTGGTGGCGC CGTGA 

 

Protein sequence

MDMETTAWHS LHHVANARQS SKPLSAAALR RIWRFADVSR PKLAQYLVVS VLAAALAVLT 
PVLAGRVVEA IVSGGTTGFV AGLAGLIAVI ALVEAGLGLL ARWLSASLGE NLILRLRTVV 
YDHVQRLPVA FFTRTRTGAL VSRLNNDVIG AQRAFSDTLS GVVGNVVTLA LTLAVMIGFS 
WRITLLALVL LPVFVVPARR MGSRLASLEL EAAGHNAAMG DRMTERFSAP GATLVKLFGR 
PERESAEFAD RARRVRDIGV RKAMATTVFM TALTLVSALA TALVYGLGGY SALRGELDAG 
SVVSLALLLT RLYAPLTALA NARVEMMSAL VSFERVFEVL DLEPLVAEKP GAVAIPDGPA 
AVEFRDVRFS YPAADKVSLA SLEEVAVLDS RGGEEVVRGV SFTAEPGQLV ALVGSSGAGK 
STIASLLPRL HDVDSGAVLV SGVDVRDATS ASLRESLGVV TQDGHLFHES VRDNLLLAAP 
GASDEQLWDA LRRARLDGLV ASLPEGLDTV VGERGYRLSG GERQRLTIAR VLLARPRVVV 
LDEATAHLDS TSEAQVQEAL GEALAGRTAL VIAHRLSTIR SADVILVVEG GQVVERGTHA 
ELLAAGGRYE QLHRTQFAEE AAGEAAGSGR AGASGTAGTS GAAGGGAGRA VVAP