Gene Amir_5225 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAmir_5225 
Symboldef 
ID8329427 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameActinosynnema mirum DSM 43827 
KingdomBacteria 
Replicon accessionNC_013093 
Strand
Start bp6221883 
End bp6222428 
Gene Length546 bp 
Protein Length181 aa 
Translation table11 
GC content70% 
IMG OID644945664 
Productpeptide deformylase 
Protein accessionYP_003102892 
Protein GI256379232 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0242] N-formylmethionyl-tRNA deformylase 
TIGRFAM ID[TIGR00079] peptide deformylase 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.240861 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGACCGTCC AACCCATCCG CCTGTTCGGC GACCCTGTCC TGCGGACCCC CGCGGTCGAG 
GTGACCGAGT TCGACGTCGA GTTGCGCAAG CTCGTCAAAG ACCTCTGGGA CACCATGAGC
GACGCGGGTG GGGCCGGGCT GGCGGCTCCC CAGCTCGGCG TTGGGCTCCG GGTGTTCACC
TACCACTGCG ACGGGTTCGC CGGGCACATG GTCAACCCGA CCTTCGACGT CGTCGGCGAC
GAGACGCAGG ACGGGCCCGA GGGGTGCCTC TCCATCCCCG GCATGTCCTG GGACTGCGTG
CGGCACCGCC AGGTCGTCGC CCGCGGCTGG AACATGCACG GCGAGCCGGT CGAGGTCGAG
GGCACCGACC TGCTCGCCCG CTGCATCCAG CACGAGACCG ACCACCTCGA CGGCGTCGTC
TTCGTCGACC GCCTGGACGA GGAGACCCGC AAGCGGGCCA TGCGGGAGAT CCGCCAGGAG
TCCTGGTTCG GCGGCAACGT CCCGATCATC AAGCAGAGCC CGCACCCCCT GTTCGGAGGC
AACTGA
 
Protein sequence
MTVQPIRLFG DPVLRTPAVE VTEFDVELRK LVKDLWDTMS DAGGAGLAAP QLGVGLRVFT 
YHCDGFAGHM VNPTFDVVGD ETQDGPEGCL SIPGMSWDCV RHRQVVARGW NMHGEPVEVE
GTDLLARCIQ HETDHLDGVV FVDRLDEETR KRAMREIRQE SWFGGNVPII KQSPHPLFGG
N