Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Amir_5225 |
Symbol | def |
ID | 8329427 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Actinosynnema mirum DSM 43827 |
Kingdom | Bacteria |
Replicon accession | NC_013093 |
Strand | - |
Start bp | 6221883 |
End bp | 6222428 |
Gene Length | 546 bp |
Protein Length | 181 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 644945664 |
Product | peptide deformylase |
Protein accession | YP_003102892 |
Protein GI | 256379232 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0242] N-formylmethionyl-tRNA deformylase |
TIGRFAM ID | [TIGR00079] peptide deformylase |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.240861 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | GTGACCGTCC AACCCATCCG CCTGTTCGGC GACCCTGTCC TGCGGACCCC CGCGGTCGAG GTGACCGAGT TCGACGTCGA GTTGCGCAAG CTCGTCAAAG ACCTCTGGGA CACCATGAGC GACGCGGGTG GGGCCGGGCT GGCGGCTCCC CAGCTCGGCG TTGGGCTCCG GGTGTTCACC TACCACTGCG ACGGGTTCGC CGGGCACATG GTCAACCCGA CCTTCGACGT CGTCGGCGAC GAGACGCAGG ACGGGCCCGA GGGGTGCCTC TCCATCCCCG GCATGTCCTG GGACTGCGTG CGGCACCGCC AGGTCGTCGC CCGCGGCTGG AACATGCACG GCGAGCCGGT CGAGGTCGAG GGCACCGACC TGCTCGCCCG CTGCATCCAG CACGAGACCG ACCACCTCGA CGGCGTCGTC TTCGTCGACC GCCTGGACGA GGAGACCCGC AAGCGGGCCA TGCGGGAGAT CCGCCAGGAG TCCTGGTTCG GCGGCAACGT CCCGATCATC AAGCAGAGCC CGCACCCCCT GTTCGGAGGC AACTGA
|
Protein sequence | MTVQPIRLFG DPVLRTPAVE VTEFDVELRK LVKDLWDTMS DAGGAGLAAP QLGVGLRVFT YHCDGFAGHM VNPTFDVVGD ETQDGPEGCL SIPGMSWDCV RHRQVVARGW NMHGEPVEVE GTDLLARCIQ HETDHLDGVV FVDRLDEETR KRAMREIRQE SWFGGNVPII KQSPHPLFGG N
|
| |