| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_5204 |
|---|
| Symbol | |
|---|
| ID | 8329406 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Actinosynnema mirum DSM 43827 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013093 |
|---|
| Strand | - |
|---|
| Start bp | 6199639 |
|---|
| End bp | 6200691 |
|---|
| Gene Length | 1053 bp |
|---|
| Protein Length | 350 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 76% |
|---|
| IMG OID | 644945643 |
|---|
| Product | protein of unknown function UPF0052 and CofD |
|---|
| Protein accession | YP_003102871 |
|---|
| Protein GI | 256379211 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG0391] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | [TIGR01826] conserved hypothetical protein, cofD-related |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAGCCTGT CCGCTGTCGC GCTGGGCGGC GGCCACGGGC TGCACGCCAC GCTCACGGCG
CTGCGCAGGC TCACCGACGA CGTCACCGCC GTGGTGACCG TCGCCGACGA CGGGGGGTCG
TCGGGCAGGC TGCGCCGCGA GCTCGGCCTG CTGCCGCCCG GCGACCTGCG CAAGGCCATG
GTGGCGCTGG CGGACGACGA CGCCTCGTCG GCGCTGTGGT CCACGCTGTT CCAGCACCGC
TTCGGCGGCA CCGGCGCGCT CGCGGGCCAC GCCGTCGGCA ACCTGGTCCT CGCGGGCCTG
CTCGAGCAGC TCGGCGACCC GGTCGCCGTG CTGCGCGAGG CGGGCAGGCT GCTGGGCGTG
CGCGGCACCG TGCTGCCCAT GTGCACCGAG CCGCTGGAGA TCGAGGCCGA CGTGACGGGC
CTCGACGAGG ACGACGACGA GGTCAGGCGC ATCCGGGGGC AGGTCGCGAT CGCCACCACG
CCCGGTCGGG TGCAGCGCAT CCGGCTGCAC GGCCCCGGCC GCCCGAGCGA GCCGCCGCGC
GGTTGCCCGG AGGCGGTGCG GGCCGTGCTG GACGCGGACG TGGTGCTGCT CGGGCCCGGC
TCGTGGTTCA CCAGCGTGCT GCCGCACCTG CTCGTGCCGG AGCTGCACGA CGCGCTCGTG
CGGACCCGCG CGCGCAAGGT CGTGGTCCTC AACCTTGTCC CCCAACCGGG CGAAACCGAG
GGCTTCTCCC CGGAGCTGCA CCTGGACGTG CTGTCCGAGC ACGCGCCCGG ACTGCGCGTC
GACGCGGTCG TCGCGGACGC CGACTCGGTG CCCGTCCCGG ACCGGCTCAG GCGCGCCGCC
GCAGCTCTGG GGGCTGTGGC GCACCTGTCG GGCGTCGCGG TGCCCGGCGC TCCGGACCGG
CACGACTCGG CCGCGCTGGC CGAGAGCATC CGGCGCGCGC TGGCCGGGGC GGGGGAGGAC
GGGGCCGACC CGTCCAGTAC AACGCTGCGT GAGTCGAGTG CGACGCAGCG TGAGCAGAGC
GAGAGCAGGG GAGGACCACA GCCGTGGCGA TGA
|
|---|
| Protein sequence | MSLSAVALGG GHGLHATLTA LRRLTDDVTA VVTVADDGGS SGRLRRELGL LPPGDLRKAM
VALADDDASS ALWSTLFQHR FGGTGALAGH AVGNLVLAGL LEQLGDPVAV LREAGRLLGV
RGTVLPMCTE PLEIEADVTG LDEDDDEVRR IRGQVAIATT PGRVQRIRLH GPGRPSEPPR
GCPEAVRAVL DADVVLLGPG SWFTSVLPHL LVPELHDALV RTRARKVVVL NLVPQPGETE
GFSPELHLDV LSEHAPGLRV DAVVADADSV PVPDRLRRAA AALGAVAHLS GVAVPGAPDR
HDSAALAESI RRALAGAGED GADPSSTTLR ESSATQREQS ESRGGPQPWR
|
|---|
| |