Gene Amir_5137 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAmir_5137 
Symbol 
ID8329335 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameActinosynnema mirum DSM 43827 
KingdomBacteria 
Replicon accessionNC_013093 
Strand
Start bp6117848 
End bp6118363 
Gene Length516 bp 
Protein Length171 aa 
Translation table11 
GC content73% 
IMG OID644945572 
ProductRNA polymerase, sigma-24 subunit, ECF subfamily 
Protein accessionYP_003102804 
Protein GI256379144 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02983] RNA polymerase sigma-70 factor, sigma-E family 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.97666 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGAGCTGGG ACGCGGAGTT CACCCGGCAC TTCGACCGGT CCGCCGCCGC GATGCGCTTC 
ACGGCGTACC TGCTGTGCGG CAACTGGCAC GAGGCGGAAG ACGTGGTGCA GGCCGCGTAC
CTCAAGCTCT ACCTCGCCGG GCCGAGGATG GCGCACCGGG ACGGCGTCGA CGCCTACCTG
AGGCGGATCG TGGTGCGCAC GTTCCTCGGC GAGCGCCGCA AGGCGCGGTG GAGGCGGGAG
CGGGTCACCG ACGAGCTGCC CGAGGTCGGG GCGCCCGCGC AGCTCAGCGA GGACCGGGTG
GTGCTGTGGC GGGCGCTGGA CGCGCTGCCC GCCAAGCAGC GGGCGGTCCT CGTGCTGCGG
TTCTGGCACG ACCTGGGCGT TGACGAGGTC GCCCGGTCGC TGCGGTGCAC GAGCGGCACC
GTCAAGAGCC ACACCTCGCG CGGGCTGGCG GCGCTGCGCC GGCGGTTGGG GGCGGACTTC
GCCGAGCTGT GGCCGGAGGT GTCGCGGAAT GCTTGA
 
Protein sequence
MSWDAEFTRH FDRSAAAMRF TAYLLCGNWH EAEDVVQAAY LKLYLAGPRM AHRDGVDAYL 
RRIVVRTFLG ERRKARWRRE RVTDELPEVG APAQLSEDRV VLWRALDALP AKQRAVLVLR
FWHDLGVDEV ARSLRCTSGT VKSHTSRGLA ALRRRLGADF AELWPEVSRN A