Gene Amir_5020 details

Gene Information

• Locus tag: Amir_5020
• ID: 8329218
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Actinosynnema mirum DSM 43827
• Kingdom: Bacteria
• Replicon accession: NC_013093
• Strand: +
• Start bp: 5980497
• End bp: 5982353
• Gene Length: 1857 bp
• Protein Length: 618 aa
• Translation table: 11
• GC content: 77%
• IMG OID: 644945457
• Product: Transketolase central region
• Protein accession: YP_003102689
• Protein GI: 256379029
• COG category: [H] Coenzyme transport and metabolism; [I] Lipid transport and metabolism
• COG ID: [COG1154] Deoxyxylulose-5-phosphate synthase
• TIGRFAM ID: [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase

Plasmid Coverage information

• Num covering plasmid clones: 9
• Plasmid unclonability p-value: 0.0858701
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGAGCGGCG CGCCGGGTGG CACAGCCCGC CCCCCGCACG CCGACGCGAC CCCGCAACCC 
CGCTCCGAGG CGCTGCCGAC CTCGCTGGAG CAGCTGACCG GTCCGGAGGC GCTGCGGGCG 
GTGCCCGAGC GGGCGCTCCC CGCGCTGGCG GCCGAGATCC GGCGGTTCCT GGTGGAGAAG 
GTGTCGCGGC GCGGCGGGCA CCTGGGGTCC AACCTGGGCG TGGTGGAGCT GACCATCGCG 
CTGCACCGGG TGTTCGACTC GCCGCACGAC GTGCTGCTGT TCGACGGCGG CCACCAGTCG 
TACGCGCACA AGGTGCTCAC CGGTCGGGCG GCCGGGTTCG ACGGGCTGCG CGGGTTCGGC 
GGGCTGTCCG GATACCCGAG CGCGGCCGAG TCGCAGCACG ACGTGGTGGA GAACTCGCAC 
TCGTCCACCG CGCTGTCCTA CGCGGACGGG ATCGCGCGGG CGCTGCGGTT GCAGGGCTCG 
GACCGGCGCG TGGTCGCGGT GGTCGGGGAC GGCGCGCTCA CCGGCGGCAT GGCCTGGGAG 
GCGCTGAACA ACCTGGCGTC GGCGGACTAC CCGGTGATCG TGGTGGTCAA CGACAACGCG 
CGCTCGTACG CGCCGACGGC GGGCGGGCTG GCCGCGCACC TCGGCCGGTT GCGGGAGCGG 
CGGGCGCACC CGGTGTTCGA GGAGCTGGGG CTGCCGTACC TGGGGCCGGT GGACGGGCAC 
GACGTGCCCG CGCTGGAGGG CGTGCTGGCC GAGGCCGCCG CGCTGGGCAG GCCGGTGGTG 
GTGCACTGCG CGACCCGCAA GGGCCGGGGC TACCCGCCCG CCGAGGGCGA CGCGGTGGAC 
TGCCTGCACG CGGTGTCGCC GTCCGGTGGC ACGGGCGAGC GGGGCTGGGC GGACGTGTTC 
GGGGCGGAGC TGGCCGAGAT CGGGCTCCAG CGGGCGGACG TGGTGTGCGT GACGGCGGCG 
GTGCAGGGGC CGAGCGGGCT GGACGCGTTC GCGCGGCGGT TCCCGGAGCG GGTGTTCGAC 
GTGGGCGTGG CCGAGCAGCA CGCGGTGACG TCCGCGGCGG GCATGGCGAT GGCGGGCGCG 
CACCCGGTGG TGCCGCTGGC GTCGACGTTC CTGCAGCGGG CGTTCGACCA GGTGCTGATG 
GACGTGGCGC TGCACCGGCT GCCGGTGACG CTGGTGCTGG GCGGGGCCGG GGTGACCGGT 
CCGGACGGGC CGAGCCAGCA GGGCCTGTGG GACGCGGCGC TGCTGCCGCT GGTGCCGGGG 
ATGCGGGTGG CCGCGCCGCG CGACCCGGCG AGGTTGGTGG AGCTGCTGCG CGAGGCGGTG 
GCGGAGCGGG AGGCGCCGAC GGCGCTGCGG CACCCGAGCG GTCCCGCGCC GGAGGACGTG 
CCCGCGCTGC GCCGGGTCGG CGGGTGCGAC GTGCTGCACG AGGCGCACGC GGCGCGGGCG 
CTGCTGGTGG CGGTCGGACC GATGGCCGGG GTGTGCCTGG AGGCGGCGGG GCTGCTGGCG 
GAGCGGGGCG TCGGGGTGGA CGTGGTCGAC CCGAGGTGGA TCGCTCCGCT GGATCCGGAG 
CTGCTGCGGT TGGCGGGTGG GCACCGGGTG GTGCTGGTGG TGGAGGACGG CGTCGCGGGC 
GGGTCGCTGG GCGCGCGGCT GGCACAGGCG GTGGGGAGCG CGCGGGTGCG GTCGCTGGCG 
CTGCCGGTGG AGTTCCTGCC GCACGGCGAG CGGGCCGAGC TGCTGCGGCG GCGGGGGTTG 
GCGGCGGGCG ACGTCGCGGC GGCGGTGCGG CGGGTGGTGG ACGAGGACTC GCTGACGGTG 
TCGGCCTCGG TGTGCGACTG CCTGCAGGAC GTCCTGCCGT ACCGCGGCGA GCGCTGA 

 

Protein sequence

MSGAPGGTAR PPHADATPQP RSEALPTSLE QLTGPEALRA VPERALPALA AEIRRFLVEK 
VSRRGGHLGS NLGVVELTIA LHRVFDSPHD VLLFDGGHQS YAHKVLTGRA AGFDGLRGFG 
GLSGYPSAAE SQHDVVENSH SSTALSYADG IARALRLQGS DRRVVAVVGD GALTGGMAWE 
ALNNLASADY PVIVVVNDNA RSYAPTAGGL AAHLGRLRER RAHPVFEELG LPYLGPVDGH 
DVPALEGVLA EAAALGRPVV VHCATRKGRG YPPAEGDAVD CLHAVSPSGG TGERGWADVF 
GAELAEIGLQ RADVVCVTAA VQGPSGLDAF ARRFPERVFD VGVAEQHAVT SAAGMAMAGA 
HPVVPLASTF LQRAFDQVLM DVALHRLPVT LVLGGAGVTG PDGPSQQGLW DAALLPLVPG 
MRVAAPRDPA RLVELLREAV AEREAPTALR HPSGPAPEDV PALRRVGGCD VLHEAHAARA 
LLVAVGPMAG VCLEAAGLLA ERGVGVDVVD PRWIAPLDPE LLRLAGGHRV VLVVEDGVAG 
GSLGARLAQA VGSARVRSLA LPVEFLPHGE RAELLRRRGL AAGDVAAAVR RVVDEDSLTV 
SASVCDCLQD VLPYRGER