| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_4869 |
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| Symbol | |
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| ID | 8329067 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Actinosynnema mirum DSM 43827 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013093 |
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| Strand | - |
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| Start bp | 5799746 |
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| End bp | 5806618 |
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| Gene Length | 6873 bp |
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| Protein Length | 2290 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644945309 |
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| Product | YD repeat protein |
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| Protein accession | YP_003102541 |
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| Protein GI | 256378881 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3209] Rhs family protein |
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| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGAGCGCTG GATCGCCGTC CTGGAGACAG CGGACAGCGG CGCTGGGTGT CGTCGTCGTG
CTCACGGTCG CCTTCGGGCA GGCTGTGGCC ACAGCCGACC CCGGAGCCGA GCTTCCGCCG
TCGCCGCAGG AAACCCCCGT CGCCGTGCAG GACGCACCGG AGACACCGCT TCCGGACAAC
CCGAACACCG CGATCGCCCT GACCAGTCCC GCCGAAGCGC ACTGGCCCGA GCCAGCATCG
GCGGACCTCG ACCTCTCCGC CGATGGCGGA ACCCCCGCGC AGGCAGCCGC CCGCGTCGCG
GGCACGCCCG TGCCGGTCGA GGGAACCCCC GTCGCCGTCA CGGTCACGGG TGACACCGCT
CAGCGCCGTG CCGCCGCGCA GAGCGAAGAG GGGGCCAAGG TCCGCGTCGA GGTCGAGGAC
CGCGCGGACA GCAAGGCCTT GGTGGGCAAC GGCGTCGTGT TCAGCGTCGC CGACCGGGGC
AACGCCGCTG GCAAGCCGCT GGACGTCACC TTCGACTACC GCTCGTTCGC CGACGCCTTC
GGAGGCGGGT TCGGCTCGCG CCTCAAGCTC AGCGCGCTGC CGGCCTGCGC GCTGAGCACG
CCGGACAAGG CCGAGTGCCG GGTCGAGACC CCGGTCGAGA ACGCGGCCAA CAACACCGAG
GCCCGCTCGC TCTCCGGGAC TGTGAGCCTG GACGCCGAAC AGCCCGCAGT GTTCGCGGTC
AGCGCGGCAG CGGGCAGCTC CACCGGCACC TTCGCGGCCA CCTCGCTGGC CGCCGCGGGC
TCGTGGAACG CGGGCGGCTC CTCCGGTGAC TTCACCTACG GTTACCCCCT GCGGGTGCCG
CCCGCCGTGG CGGGCAGCGT GCCCTCGGTG TCGCTGGGCT ACTCGGCGCA GAGCGTCGAC
GGCCGCACGT CCGCGTCGAA CAACCAGGCC TCCTGGCTCG GCGACGGCTG GGACGCCTCG
CCCGGCGGGT TCGTCGAGCG CTCCTACAAG TCCTGCTCAC AGGACCTCGG CGGCAACAAC
GGCCAGACCA AGACCGGCGA CCAGTGCTGG GCCACCGAGA ACGCCACGAT CAGCCTCGTC
GGCGTGTCCG GCAAGCTCGT CAAGGACAAG ACCACCGGCA AGTGGCGCCC GGAGAGCGAC
GACGGCGCGC GCATCGAGCT GCTCACCGGC GCTGCCAACG GTGACGAGGG CGACGCGGGC
AAGGACGTCG GCGAGCACTG GAAGGTCACC ACTCCCGACG GCACCCAGTA CTTCCTCGGC
CTCAACCGGC TTCCCGGTTG GAGCGAGGGC AAGCCGGAGA CCAACTCCGC CTGGACGGTC
CCCGTCTACG GCAACAACAC CGGCGAGCCC TGCAACAAGG GCACCTTCGA CTCCTCGTGG
TGCCAGCAGG CGTACCGCTG GAACCTCGAC TACGTCGTCG ACCCGAACGG CAACGTCACC
ACGTACTACT ACAACAAGGA GGTCAACCAC TACGGCCGCA ACGCGGACCC GGCCAAGACG
ACCCCCTACG TGCGCGAGGG CTACCTCAAC CGCATCGAGT ACGGCCTGCG GGCCGACAAC
CCGTACGCCA CCCCGGTCGC CAAGGTCGAC TTCGAGACCG CAGAGCGCTG CCTTCCCAGC
GACACCGTCG ACTGCGCGCC CGACAAGATC AAGACCTCGC CCGGCTCGTG GCCGGACGTG
CCCGCGGACC AGCTCTGCGC CGCCGGCGAG CAGTGCACCC AGCGCAACTC GCCGTCCTTC
TTCAGCCGCA AGCGCCTGAC CAAGGTCATC ACCCGGATCT CCCAGTCCGG CGGCTGGCAG
GACGTGGACT CCTGGAAGCT GGAGCACGCC TACCTGCCCA CCGGTGACGG AAACGGGCCT
TCGCTCAACC TCAGCTCCAT CGTCCACAGC GGACACGTCG GCGGGACGAT CACGTTGCCC
GCCACCACGT TCGCCTACAA GGCGCTGGCC AACCGGGTGG ACGGGGTCGA CCACGGGATG
CCGTGGACCC GCTACCGGAT CAACCGGATC ACCGGCGAGA CCGGCGCGGT CACCGAGGTC
ACCTACAGCG ACCCGGACTG CGTGCCCGGT TCCAGGATGC CCGAGGCCCC GGACAAGAAC
ACCCTGCGCT GCTACCCGGT GTGGTGGAGC CCCGATGGCG CGCCGGAACC GATCCAGGAC
TGGTTCCACA AGTACGTCGT CACGTCGGTC TCCCACACCG CCAGCACCGG CGGCTCAGCC
ATCATGCCGA CCTACTACGA GTACAAGGGC GCTCCCGCCT GGCACTTCGA CGAGAACGAC
TTCGCCCAGG ACAAGCACCG CACCTGGTCG CAGTGGCGCG GCTACGAGAC CGTCCGCATC
ACCAAGGGCG CGACGGTCAG CGCGCAGAGC GCGTCCGAGA CCGTCTACTT CCGGGGCATG
CACGGCGACA AGCTGTCCAG CGGCACCCGG AGCGTGGACG TCGAGAACAG CGAGGGCGAA
CCGCACCGCG ACGACGACCG GCTGCGCGGC GCGGTGCGCG AGATGCGCCA GTACAACGGC
GCCGAGCTGG TGTCCGCCTC GGTCAACGAC CCCTACCTGC CCGAGACGCC GACCGCCGAG
GACGCGGCAG GCCGCAAGGC GTTCGTCAGC GGCGTCGCCG CGGTGCGCGG GCGCAGCAAG
CTCGCGGACG GGTCCTGGCG GCGCACCAAG GTCGTCAAGA CGTTCAACGC CGAAGGCATC
CCGACCACCG CGGAGGACCA CGGCGACCTC GCCGTGACCG GTGACGAGAG CTGCACGCGC
ACCGAGCACG CCCGCAACGA GACCGCGTGG ATGCTCACGT ACGCCAAGCA GGTCGAGACG
GTCAAGGGCA CCTGTGACGT CCAGGCGTCA CCGGGGACGA TCCTGTCCTC CGCCCGCTCC
TCCTACGACG GTCAGGAGCA CGGAGCCGCC CCCACCAAGG GACTGATCAC CAAGGCCGAG
GTGCTCGACG GCTGGGACTC CGCGGGCCAG AAGTGGATCA CCGCGTCCAC CTCGACCTAC
GACGGCTACG GCCGTCCTCT GGAGATCACC GACTCGGGGG GCCACAAGAG CCGCACCGAG
TACATCCCGG CGACCGGGGC GCCCGCCCAG ATCAAGAGCA CCAACCCGCT CGGGCACACC
GCGACCGAGC ACGTCGAAGC CGCCTGGGGC GCATCCGTCG CCTCGGTGGA CGCCAACAAC
CGGCGTTCCG ACCTCTCCTA CGACGCGCTG GGCAGGCTGG TCGCGGCTTG GACGCCTGGG
CACGACAAGA ACGCGGTGAC CGCGGACGCG GTGTTCGAGT ACCACTACAA CACCACCCAG
CCCAGCGTCG TGGTCACCAA GCAGCGTCAG GACGACGGCG GCTACCTGAC GAGCTACACG
CTCTACGACG GTCTGATGCG CCAGCGGCAG ACCCAGATCC CCACGCCGTA CGAGAAGGGT
GGTCGCCAGA TCACCGACAT CTTCTACGAC TCGCGCGGTC TGGCGCACAA GACGAACGGC
CTCTACTACA ACACCGAGCC GCCCAGCGAC AAGCTGGCGC TGACCTTCGA CAACAAGGTC
CCAAACCAGA CCGTCACCGA GCACGACGGC ATGGGGCGCG TCACCGCGGC GATCTTCCGG
GTCGACGACG TGGAGAAGTG GCGCACCACC ACCGCCTACA GCGGCGACCA GGTGCACACC
ACCCCGCCTG CGGGCAGTCC GGCCACGACG ATCATCAACG ACGCCCAGGG ACGCACCACC
GAGAAGCGCC AGTACGAGAA CGGCATCGGC AGCACGTACG ACGCCACGAA GTACACCTAC
AACGCGGCCG GTCTGCTGGA GACGGTGACC GATCCGGCGG GCAACACCTG GCGCTACGGC
TACGACCTGC GAGGCCGCAA GGTCAGCACC GATGACCCGG ACACCGGGCG CAGCACGATC
GCGGTCAACG TGCTCGGCCA GATCACCAGC ACCACCGACG CCGAGGGCCG CACGGTCGCC
AACACCTACG ACCAGCTCGG CCGTCCCACC GCTCGCTACC AGGACTCGCC CCAGGGGACG
AAGCTGGCCG AGTGGGAGTA CGACAGCGTC CAGGGCGGCA TCGGAATGCC CGCGCTGTCC
CGGCGGCTGG TCAATGGTGC GGAGTACACC ACGCGCACCA CGGGGTACGA CGACGCCGGA
CGGCCGACCG GCACGGAGAT CAGCATCCCC GAGGTCGAGG GCGTGCTGGG CACCACCTAC
CAGGCCACTC AGGACTACAC CTACACGGGC AAGCCCGCGT CGACCGGCCT GCTCGACGTC
ATCTCAGGTG ACGAGCTGAT CGTCGAGGGC GAGACGCTCA CTCATTACTA CGACAACGCC
AACGGCTCCC TGGAGCAGAC CGTCGGGCAG CAGACCTACG TCACGAACAC CGACTACAGC
GCGCACGGCG AAGTCATCGG CACGGTGCGC GGAGAGAACT ACGAAGGCGC CAAACAGGTC
GCCGTCACCA ACTCCTACGA GGTCGGCACC CGCCGCCTCG TCACGTCGGA GGTGCACGCC
CTCTCCACGC GGACGACCCA GCTGGCCAAC CGGAACTACG CGTACGACGC CTCCGGCAAC
ATCACCCGCA TCGCGGACGC GCCCTCGGGC ACCGTGCCGG ACATCCAGTG CTTCGCCTAC
GACCACCTGC GCCGGATGAC CGACGCGTGG ACCCCGTCCA CGGGGGACTG CAACGCGGTG
AAGTCCACCG CCGCGCTGGG CGGCGCCGCG CCGTACTGGC ACTCCTGGAC GTTCGACAAG
ACCGGCAACC GGCTCACCGA GACCCAGCAC GCCGCTGCGG GTGACACGGT CCGCACCACC
GCCTACCCGG CGGCGGGCCA GCCCCAGCCG CACACGGCGA CCTCGGTGAC CACGACCAGC
CCGACCGGCG ACTCGATCGA CACCTTCGCC TACGACCGCT CGGGGAACAC CACCTCGCGC
CTGGTCGGCG GCGACCGGCA GGTGCTGGAG TACGACGTCG AGGGCAAGGT CTCCAAGGTC
CGCAACCCCG ACGGCAAGGA GTCCACCTAC CTCTACGACG CCAACGGCTC ACGCCTGATC
AGCCGCGAGC CGTCCGCGAC GACCCTGTAC GTGTTCGGCC AGGAGATCCG CCTGGAAAAG
GGCACGTCCA AGCCGAGCTG GACCCGGCAG TACAGCCACG GCGGCGAGGT CGTGGCGGTG
CGCAACAGCG TCAGCGGCCT GAAGTGGGTC ATCGCCGACC ACCAGGGCAC CAACCAGATG
TCGGTGCACC CGGACACCCT GGAGCCGCAG CGGCGCAGGC AGACCCCGTA CGGCGAGGCC
CGAGGCGGCC TGCCGTCGGC GTGGCCGGAC CGCTTGGGCT TCGTGGGTGG TCGCAATGAC
GAGTCGGGGC TGACGCAGGT CGGTGCGCGG TTGTACGACG GTGCGTCGGG CCGGTTCCTG
ACCGCGGACC CGGTCATCGA CAACAACGAC CCGCAGCAGA TGAACGGGTA CGCGTACAGC
AACAACAGCC CGGTCACGTT CAGCGACCCG ACAGGGTTGC GGCACTGTGG AATCGACGGC
GTGCTGTGCG GGCCTCGGAT CGAGGCCATC CACGGCAGCC CGGAGGAGTA CGAGGCGGCA
CGTCAGGCTG AGAAGGCGCG CCAGAAGGGC TGGCAGCAAC AGCCCAACGC GGCGACTAGC
GGCAACGTCG AGCAGCAGGC GGCCCAGGAC CGGCGTGCGG CTGGGATCAG CGACGTCGAG
TACCAGAACG CGCTGGCGAA CGCCCACAAG ACGAAGTGGG ACGTGATCAA GGAAGTCGCC
TGGGAGGTCA TCAAGGACAT CTCGGGTTGG AACGACATCG TCGACTGCTT CAGCCGGGGC
GACATCCTGG CCTGCGGTGG CCTGGTGTTC GACCTGGTGC CCTGGGGCAA GGTCGGGCGT
GTCCTGGAGG CCGGTTACAA GGCGTACAAG GCGGTTGACT CGCTGGTCGA CACCGTGCGG
AACGCGCGGG CGATCCTACG TCGGGTCGAC GACATCACCG CTGCCGCCGA GCGGGCGGTG
CTGAGGTCGC AACAGCGGAA GCTCGGCGGT GGTAGTGCCA GTTGCCCCAA CCACAGCTTC
GTCGGAGCGA CCAAGGTCGT GATGGCGGAT GGCTCGGAGA AACCGATCTC CGAGGTCGAG
TTGGGCGACC AGGTCAAGGC GACCGATCCG GAAAGCGGCG AAACCACCGC GCGTGAAGTC
GTGGCGACCT TTGTCCACTC TGATGAGGGG GACATGACTC GTCTGGTCGT GCGTGGTGAG
AGTGGCGAAA ATGGGACAGT CGACGCGACC TCGTGGCACC CGGTGTGGGT CGATGCCAAG
GGCAGGTTTG TCAACATCGG CGAGCTGGCG GTCGGGGACC GGTTGACCTC GGTCGACGGG
ACGTCACCCG AGGTTGTCGG GGTCCAGGAC TATACCCACT TCGAACCAGT TTATGACTTG
ACGGTCGAAG GTGTGCATAC GTACTACGTT TTGTCGGGTG TGCAGTCGAC CCTGGTGCAC
AATTGTGACT CAACCCTGTG GGAGCCGAAT CGACCTGATA CTGACAACGA ACCGCAGGAA
TGGATTCCTG ACGATGTTTG GATCTCGAGT GGCGAGAACT TGCTGCCAGG TGAGTACCAC
TATGTAGTAA TGCCTAATCG GAGTGTCCGC GCCTTTCATG ATGGAACGAC TTTCGAAAAC
TACCCTGCTG CGGGGCACAC CAGCCTCGGG CGAGGGGGAC TGGTTTCCGG AGCGGGCACA
TTTGAGGTCG ACTCCGATGG TTCGATTGCC GCCTATGATA ACCACTCGGG TCACTATAAA
CCCGATAGGT CAATCTATCG AACTGTAACA TCGGCTCTTC TTGATAGCGG TTTTGACGTT
TCGCGTGCAC AGTGGACTGA TCGAAACAGG TAA
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| Protein sequence | MSAGSPSWRQ RTAALGVVVV LTVAFGQAVA TADPGAELPP SPQETPVAVQ DAPETPLPDN
PNTAIALTSP AEAHWPEPAS ADLDLSADGG TPAQAAARVA GTPVPVEGTP VAVTVTGDTA
QRRAAAQSEE GAKVRVEVED RADSKALVGN GVVFSVADRG NAAGKPLDVT FDYRSFADAF
GGGFGSRLKL SALPACALST PDKAECRVET PVENAANNTE ARSLSGTVSL DAEQPAVFAV
SAAAGSSTGT FAATSLAAAG SWNAGGSSGD FTYGYPLRVP PAVAGSVPSV SLGYSAQSVD
GRTSASNNQA SWLGDGWDAS PGGFVERSYK SCSQDLGGNN GQTKTGDQCW ATENATISLV
GVSGKLVKDK TTGKWRPESD DGARIELLTG AANGDEGDAG KDVGEHWKVT TPDGTQYFLG
LNRLPGWSEG KPETNSAWTV PVYGNNTGEP CNKGTFDSSW CQQAYRWNLD YVVDPNGNVT
TYYYNKEVNH YGRNADPAKT TPYVREGYLN RIEYGLRADN PYATPVAKVD FETAERCLPS
DTVDCAPDKI KTSPGSWPDV PADQLCAAGE QCTQRNSPSF FSRKRLTKVI TRISQSGGWQ
DVDSWKLEHA YLPTGDGNGP SLNLSSIVHS GHVGGTITLP ATTFAYKALA NRVDGVDHGM
PWTRYRINRI TGETGAVTEV TYSDPDCVPG SRMPEAPDKN TLRCYPVWWS PDGAPEPIQD
WFHKYVVTSV SHTASTGGSA IMPTYYEYKG APAWHFDEND FAQDKHRTWS QWRGYETVRI
TKGATVSAQS ASETVYFRGM HGDKLSSGTR SVDVENSEGE PHRDDDRLRG AVREMRQYNG
AELVSASVND PYLPETPTAE DAAGRKAFVS GVAAVRGRSK LADGSWRRTK VVKTFNAEGI
PTTAEDHGDL AVTGDESCTR TEHARNETAW MLTYAKQVET VKGTCDVQAS PGTILSSARS
SYDGQEHGAA PTKGLITKAE VLDGWDSAGQ KWITASTSTY DGYGRPLEIT DSGGHKSRTE
YIPATGAPAQ IKSTNPLGHT ATEHVEAAWG ASVASVDANN RRSDLSYDAL GRLVAAWTPG
HDKNAVTADA VFEYHYNTTQ PSVVVTKQRQ DDGGYLTSYT LYDGLMRQRQ TQIPTPYEKG
GRQITDIFYD SRGLAHKTNG LYYNTEPPSD KLALTFDNKV PNQTVTEHDG MGRVTAAIFR
VDDVEKWRTT TAYSGDQVHT TPPAGSPATT IINDAQGRTT EKRQYENGIG STYDATKYTY
NAAGLLETVT DPAGNTWRYG YDLRGRKVST DDPDTGRSTI AVNVLGQITS TTDAEGRTVA
NTYDQLGRPT ARYQDSPQGT KLAEWEYDSV QGGIGMPALS RRLVNGAEYT TRTTGYDDAG
RPTGTEISIP EVEGVLGTTY QATQDYTYTG KPASTGLLDV ISGDELIVEG ETLTHYYDNA
NGSLEQTVGQ QTYVTNTDYS AHGEVIGTVR GENYEGAKQV AVTNSYEVGT RRLVTSEVHA
LSTRTTQLAN RNYAYDASGN ITRIADAPSG TVPDIQCFAY DHLRRMTDAW TPSTGDCNAV
KSTAALGGAA PYWHSWTFDK TGNRLTETQH AAAGDTVRTT AYPAAGQPQP HTATSVTTTS
PTGDSIDTFA YDRSGNTTSR LVGGDRQVLE YDVEGKVSKV RNPDGKESTY LYDANGSRLI
SREPSATTLY VFGQEIRLEK GTSKPSWTRQ YSHGGEVVAV RNSVSGLKWV IADHQGTNQM
SVHPDTLEPQ RRRQTPYGEA RGGLPSAWPD RLGFVGGRND ESGLTQVGAR LYDGASGRFL
TADPVIDNND PQQMNGYAYS NNSPVTFSDP TGLRHCGIDG VLCGPRIEAI HGSPEEYEAA
RQAEKARQKG WQQQPNAATS GNVEQQAAQD RRAAGISDVE YQNALANAHK TKWDVIKEVA
WEVIKDISGW NDIVDCFSRG DILACGGLVF DLVPWGKVGR VLEAGYKAYK AVDSLVDTVR
NARAILRRVD DITAAAERAV LRSQQRKLGG GSASCPNHSF VGATKVVMAD GSEKPISEVE
LGDQVKATDP ESGETTAREV VATFVHSDEG DMTRLVVRGE SGENGTVDAT SWHPVWVDAK
GRFVNIGELA VGDRLTSVDG TSPEVVGVQD YTHFEPVYDL TVEGVHTYYV LSGVQSTLVH
NCDSTLWEPN RPDTDNEPQE WIPDDVWISS GENLLPGEYH YVVMPNRSVR AFHDGTTFEN
YPAAGHTSLG RGGLVSGAGT FEVDSDGSIA AYDNHSGHYK PDRSIYRTVT SALLDSGFDV
SRAQWTDRNR
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