| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_4822 |
|---|
| Symbol | |
|---|
| ID | 8329020 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Actinosynnema mirum DSM 43827 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013093 |
|---|
| Strand | - |
|---|
| Start bp | 5741267 |
|---|
| End bp | 5742052 |
|---|
| Gene Length | 786 bp |
|---|
| Protein Length | 261 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 644945263 |
|---|
| Product | Xylose isomerase domain protein TIM barrel |
|---|
| Protein accession | YP_003102495 |
|---|
| Protein GI | 256378835 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1082] Sugar phosphate isomerases/epimerases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.0000375488 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAGCGGGT GGCGGTTCGC GGTCAGCACG TTGGGGGCGC CCGGGGTTCC GGTTCGGGAG
AGCGCGCGGG TGGCGGCTGA GCACGGGTGT CACGGGCTGG AGGTTCGGGT TCACCCGGAT
GAGGAAGTTC GGGTGGGGAT CACGGCTGCT CGGGCCGCTC GGGTGCGGGA GGAGGTTGCG
GCGGCCGGGG TGGAGATCGC TTGTCTTGCC GGGTACGTGC GGGTTTGCGC GCCCGGTGGG
GCGGTGGTTG ACGAGTTGTG GCGGTTGGTG GAGTTGGCCG GGGTGCTGGG GGCGCCTGCG
GTTCGGGTTT TTCCCGGTGG GGGTGATGGG GGTGTGAGGG GGGATGAGGT TGCCGTCGAG
CGGATCGGGG CGGTGTTGCC GGAGTTGAGG GACGCCGGGG TTCGGTTGTT GGTGGAGACG
CACGATTCGC ACGCCACCGG GGAGGCGGCG TTGCGGTTGG TCGAACCGTT GGGGGAGCCG
GGAGTCGCTG CGGTGTTGTG GGACGCGGTG CACCCCTGGC GGAGTGGGGA GTCGCCTGAG
CGGACCCGTG CCGTGCTGGG GGAGTACCTG GGGTACTTCC AGGTCAAGGA CGTTGAGGCC
GGTGGGCCTA CGCCGGTTCC GCCTGGGGCT GGGGTGGTTC CGCTCGGGGA GTGCGGGCGG
GTGCTGGGGG ACTGGTCCGG CTGGGTTTCG CTGGAGTGGG AGCGGGCCTG GTATCCGGGG
ATCGAGCCGT TGGAGGTGCC GTTGCGGGCC GCTGCCGAGT GGTTCGAGGT GTGGCGGCCT
CGGTGA
|
|---|
| Protein sequence | MSGWRFAVST LGAPGVPVRE SARVAAEHGC HGLEVRVHPD EEVRVGITAA RAARVREEVA
AAGVEIACLA GYVRVCAPGG AVVDELWRLV ELAGVLGAPA VRVFPGGGDG GVRGDEVAVE
RIGAVLPELR DAGVRLLVET HDSHATGEAA LRLVEPLGEP GVAAVLWDAV HPWRSGESPE
RTRAVLGEYL GYFQVKDVEA GGPTPVPPGA GVVPLGECGR VLGDWSGWVS LEWERAWYPG
IEPLEVPLRA AAEWFEVWRP R
|
|---|
| |