Gene Amir_4578 details

Gene Information

• Locus tag: Amir_4578
• ID: 8328776
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Actinosynnema mirum DSM 43827
• Kingdom: Bacteria
• Replicon accession: NC_013093
• Strand: +
• Start bp: 5424665
• End bp: 5425444
• Gene Length: 780 bp
• Protein Length: 259 aa
• Translation table: 11
• GC content: 67%
• IMG OID: 644945029
• Product: transposase IS4 family protein
• Protein accession: YP_003102261
• Protein GI: 256378601

Plasmid Coverage information

• Num covering plasmid clones: 31
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCAGGTCA TATCAGCATC CCGATCGGAG TGGATCGTCC CGTTCACGGG CTTGCAACCA 
GGCCAGTTCC GTAGATTGGT CCGTGTCGTG GCCGAACGCG GCGGTGACAC GATCGCCGAC 
GGTCGCCCCG GTCGGCAATG GCGGCTCGAC CTGGCCGACC GGGTACTGCT GGTCGCGACC 
TACTGGCGGA CCAACCTCAC GATGCGCCAG ATCGGACCAC TGTTCGGGGT ATCGCACTCC 
GCAGCGCATC GGGTCGTGGA CAGCCTGGGC CCGCTGCTGG CCCTGGCGCC GGTGCGGCGC 
CGCCGGATCG ACCAGATCGC CATCGTCGAC GGAACCCTCG TGCCCACTCG TGATCACCGC 
CTGGCGGCGA GGTCGAAGAA CTACCGGTAC TCCACCAACC TGCAGGTCGC CATCGACGCC 
GACACCCGCC TGGTCATCGA CATCGGCGAC CCGCGACCGG GCAACCGCAA CGACTGCACC 
GTCTACCGCG ACTCTGGCAT CAAGGACACC CTCGCCGGAC GACCGGTGAT GGCCGACGGC 
GGCTACCAGG GCAACACCGG CGTGATCATG CCCTACCGCA AACCCCGCGA CGGCAGCGAA 
CTTGCCGACT GGCAGGAAGA CCTCAACACC ACCCACCGCG CGATCCGCGC CCGCGTCGAA 
CACACCTTGG CCCGGATGAA GAACTGGAAG ATCCTGCGCG ACCATCGCCG CGCCGCCCAC 
ACCCTGCACG ACACCGCTCT GGGCATCGCC CATCTTCACA ACCTCGCCAT CACCGGCTGA 

 

Protein sequence

MQVISASRSE WIVPFTGLQP GQFRRLVRVV AERGGDTIAD GRPGRQWRLD LADRVLLVAT 
YWRTNLTMRQ IGPLFGVSHS AAHRVVDSLG PLLALAPVRR RRIDQIAIVD GTLVPTRDHR 
LAARSKNYRY STNLQVAIDA DTRLVIDIGD PRPGNRNDCT VYRDSGIKDT LAGRPVMADG 
GYQGNTGVIM PYRKPRDGSE LADWQEDLNT THRAIRARVE HTLARMKNWK ILRDHRRAAH 
TLHDTALGIA HLHNLAITG