| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_4544 |
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| Symbol | |
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| ID | 8328741 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Actinosynnema mirum DSM 43827 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013093 |
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| Strand | - |
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| Start bp | 5384030 |
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| End bp | 5388496 |
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| Gene Length | 4467 bp |
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| Protein Length | 1488 aa |
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| Translation table | 11 |
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| GC content | 75% |
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| IMG OID | 644944999 |
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| Product | YD repeat protein |
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| Protein accession | YP_003102232 |
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| Protein GI | 256378572 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3209] Rhs family protein |
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| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0377133 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGACCGGGA TCGGGATCGC TGAGTCCTCG GTTGACCTGG CCAACGGGAT CGCTGACGGG
AACTGGGTCG AGGCCGGGCT CGGGGGTGCT GGGGTCGGGC TGGAAGTGCT GTCGATGGTG
ATCGACCCGG TGGGGACGGT CGCGTCGTAC GGCGTTGGGT GGCTGATGGA GCACGTGCAG
CCGCTCAAGG AGGCCTTGGA CTGGTTGGCG GGGGATCCGC CGGTGATCCG CTCGTTCAGC
GAGACCTGGG GCAACGTCGC GGCCGAGGTC AAAGGGGTTG CCGAGGAGTT GGGGCGGCAG
GACGCCGCTG GGTGGGAGGG GGCGGCTGCC CAGGCGTTTC GGAGGGCCAA CGCCGAGACT
GTCGACGCCA TCGCCGGGGC TGGGGTGCTG GCCGAGGGGA TCGGCGTTGG CGTGATGGTC
ATGGGGGAGG TGGTTGCCGC CGTCCGCGAG CTGGTGCGGG ATCTGGTCGC GGAGTTGGTG
GGGCGGCTGA TCTCCTGGGC GTTGGAGGCC GTGGCGACCT TGGGGTTGGC CACGCCGGTG
ATCGTGGCGC AGGCGGCCAC CGCGATCTCG CGGATGTGCT CGCGGATCGC GGATCTGGTG
CGCAAGCTGG TGAAGACGAT CTCGAACGTG GCGCCGCGCA TCCGGGCCGT GGTCGACAAG
CTCGGTGAGA TCATGCAGAA GCTCGGCAGG ATCGGGCGGC GGGCGGATGT TCCTGGGGGG
CCGGATGCGC CCAGCGTGCC GAACGCCCCT GCGCCTGACG GGGTCACCGG GCCGTCGGGG
ACCACGACGC CGTCGGGCAG CACGACGCCG TCGGGCAGCA CGACGCCGTC GGGGACCACG
ACGCCTTCGG GGACCACGAC GCCTTCGGGC AGCACGACGC CGTCGGGGAC CACCACGCCG
TCGGGAACCA CCGCCCCTTC CGGCGACGCG GCTCCCAGCG GTGCCACATC CCCGTCCAGC
AGCCCGGACA CCCCGGCAGG CGGTCAGGGC TCCGGGGCCT CCAGCAGCCG CGCCGAACCC
GAGCCCAAGC CCGACGGCCC CCCGACGCCG GACGACCCCG AAGCCGCCTC CTGCTCCGCG
GACCGGCCCT TCTGCGCCGA CGACCCCATC GACGTCGCCA CCGGGGACGT CGTGCTCTCG
CAGACCGACG TCGTCCTCCC CGGCCTCCTC CCGCTCCTCC TCACCCGCCA CCACCAGTCC
CGCTACCGCT CCGGCGCCCT CTTCGGGCCC TCCTGGTCCT CCACCCTCGA CCAGCACGTC
TCGGTCAGCG CCTCGCACGT CTGGCTCGCC ACCGAGGACG GCAGGCTGCT GCGGTACGCC
AAACCTGCCG GGGACGAGTC GGTCCTGCCG GACTTCGGGC CGCGGCTCGC GCTGCGCCGG
CACGGGGACG GGTACCTGGT CGACGACCCC CGGCGTGGCA CCACCGCCGA GTTCCGCCCC
GTCGGCGACG AGCGGGGCGC GCGTTCCCGG TTGCCGCTGA CGGCCGTGCG GCGGCACGCG
GGCGGGGAGC TGGTGGTCGA GCACGACGGA GCCGGGCTTC CCACCAGGGT GCGCCACTCC
GGCGGCTACG AGGTCGCCGT GGACACGGAC GGCGGGCGGG TCACCGGACT GCGGCTCACC
TCCGCGGCGC GGGCGATCAC CCTGACGCGC TACGGGTACG ACGAGACCGG GCAGCTGGCC
GAGGTGGTCA ACTCCTCCGG CCTGCCGCTG CGGTTCACGC ACGACGCCGA CGGGCGGCTC
ACCTCGTGGA CCGACCGCAA CGGCGTCTGG TACCGCTACG TCTACGACGA CCGCGGCCGG
GCCGTCACCA CCATCGGGTC CTCCGGCGCC CTCAACGGCA CCTTCCGCTA CGAGGAGCGC
CGCACCACCC ACACCGACAC CCTCGGCAAC GCCACCACCT ACGACCTCGA CGAGCGCGGT
CGGGTCGTCC GCGAGACCAA CCCGCTCGGG GCGGTCACCG GCCGCGAGTG GGGGGAGCGG
GAGCAGCTGC TCGCCGTCAC CGACCCGCTC GGGCGCACCA CCCGCTACGA GCACGACGAC
GACGGCAACG TCACCACCGT CACCCGCCCG GACGGCAGCA CCCTCACCGC CGCCTACACG
ACCGGCGGGC GCGACACCCG CGTCACCGAC CCGGCGGGCG GGACCTGGCT GCGCGACCAC
GACGCGCTCG GCAACCTGGT CGCCGAGACC GACCCCACCG GCGCCACCAC CCGCTTCGCC
TACGACGAGC GCGGCCACCT CGCCGCCACC ACCGACCCGC TCGGCGCGGT CACCCGCTAC
CGCACCGACG CCGCGGGCCT GATCACCGAG CTGACCGACC CCCTCGGCGC CACCACCCGC
TTCGAGCGCG ACGCCTTCGG CCGCGTCGTC GCCGAGACCG ACCCGCTCGG CGGCGTCACC
CGCACCACCT GGACCGTCGA GGGGCGGATC ACCTCGCGGA CTCGGCCCGC CGGCGGCGTG
GAGCGGTGGG CGTACGACGG CGAGGGCAAC GTCGTCGAGC ACGTCGACGA GGTCGGCCAG
GTCACCCGGA CCCGCTACAC CCACTTCGAC CTGCCCGCCG CCCGCACCGC GCCCGACGGC
GCCACCACCA CCTACGCCTA CGACACCGAG CTGCGCCTGA CCGAGGTCGT CGGGCCGCAC
GGGCTGGCGT GGCGGTTCGA GCGCGACGCG GCGGGCGAGG TGGTGCGCGA GACCGACTTC
GACGGGCGCG TCACCCGCTA CGCCTACGAC GCCGCCGGAA GGCTCGCCGC CCGCGTCAAC
GGGCTCGGCG AGACGATCTC CTACGACCGC GACGTGCACG GCGGCATCGT CGCCAAGCAC
ACCCCGAGCG GCACGTCCGC GTTCGACCGG GACCCGTGCG GGCGCGTCGT GCGCGCGGCC
GGGCCCGACG TCGAGGTGCT CTTCGAGCGC GACGCCAGGG GCCGGGTCCT CGCCGAGACC
TGCGACGGCC GCACCACCCG CTCCGAGTAC GACGCGGCGG GCAGGCGGGT GCGCCGGACC
ACGGCGGGCG GCGTCGCCAC CGGCTGGGAC TACGACGCGG CGGGCAACCC GGTGGCGCTG
CGCGCGGACG GCGGCACGAT CACCTTCCGG CACGACGCGC TCGGCAGGCA GGTGCGCCGC
GAGCTGGGGC GCCTGAGCGT GCTGCGGTCC TACTCGCCGG ACAGCAGGCT CACCGACCAG
CTCGTCACCG CGGGCGGCCC GGTGGACCGG CGCGGGTGGC GCTACCGGCC GGACGGCAAC
GTCGACGGGG TGCTCGACCC GTCGGGCGGC CGGGCGCTCG CCCTGGACCG GCGCGGGCGG
GTGCTGTCGG TGCGCGGGCC CGGCTGGGAC GAGCGCTACG AGTACGACGC GGTCGGCAAC
ATCACCGACG CGTCGCCCTC GGGGCCCGAC GACCCGACCG CCGGGCCGCG CGCGCACGAG
GCGAACCGGT TGCGCGCGGC GGGCCGCACC ACCTACGACC ACGACGCGCA GGGCCGCGTC
GTGCGCCGCC GGACCCGCAC CCTGTCCGGC TCGGTGCTGG TCTGGACCTT CGGCTGGGAC
GCGGAGGACC GGCTCACCTC CGCGTCGACC CCCGACGGCG GCACGTGGCG CTACCGCTAC
GACCCGATGG GCAGGCGCGT GGCCAAGCAG CGCCTCGACG CGCGGGGCTG CCCCGTCGAG
CGCCTGGACT TCACCTGGGA CGGCACGCTC CTGGCCGAGC ACACCGGCGC CGACGGGAGC
GGCAGCACCT GGGAGTACGA GCCGGGCACC ACCACCCCGG TCGCCCAGCT CGACCGGGTC
GGGCTCGACC GGCGGTTCTA CGCCGTCGTC GCCGACCTCG TCGGCTCGCC GACCGAGCTG
GTCGACGCGG ACGGCGAGGT CGCCTGGCGG CGCACCGCCA CCCTGTGGGG CCGCACGCTC
GCCCAGTCCG GCCCGGCGAC GTGCCCGCTG CGGTTCCCCG GCCAGTACCA CGACGGCGAG
ACCGGCTGGC ACTACAACCA CCTGCGCCAC TACGACCCGG ACACCGGCCG CTACGCCTCG
CAGGACCCGC TGGGCCTGAT CCCGTCGATC AACCCCGGCG CGTACGTGCC CAACCCGATC
CGGTTCGTGG ACCCGCTGGG CCTGCAGGGC TGCGGCGTCA GCGGCGACGA GGCCAGGCAG
CAGGCGCTGG CCGACGCGGG CGTGCCGCCC GGCTCCGAAC CGCTGGAGAC CAGGGTGACG
CCGTCCACCA CGCCGGGCGG CAGGCAGGTC ATGCAGGACC ACCAGCCGGT GTTCTTCCCG
GAGGAGGTGT ACCTCAACAA CCGGGACGAG CTGATCGTCT TCCAGGACCA CTACACCGGC
CACCAGTTCG GCGAGGGCGG GGTCGGGGAC CAGCCGCCGC ACGTGCACGT CCGCCCCTAC
GACAACCCCC GCAACGGGCA GGTCCCCGGA GCCGAGGAGC ATTACTACTA TGACCCCAGC
CTGGGCCGAC CGACTCCTGC CGGCTGA
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| Protein sequence | MTGIGIAESS VDLANGIADG NWVEAGLGGA GVGLEVLSMV IDPVGTVASY GVGWLMEHVQ
PLKEALDWLA GDPPVIRSFS ETWGNVAAEV KGVAEELGRQ DAAGWEGAAA QAFRRANAET
VDAIAGAGVL AEGIGVGVMV MGEVVAAVRE LVRDLVAELV GRLISWALEA VATLGLATPV
IVAQAATAIS RMCSRIADLV RKLVKTISNV APRIRAVVDK LGEIMQKLGR IGRRADVPGG
PDAPSVPNAP APDGVTGPSG TTTPSGSTTP SGSTTPSGTT TPSGTTTPSG STTPSGTTTP
SGTTAPSGDA APSGATSPSS SPDTPAGGQG SGASSSRAEP EPKPDGPPTP DDPEAASCSA
DRPFCADDPI DVATGDVVLS QTDVVLPGLL PLLLTRHHQS RYRSGALFGP SWSSTLDQHV
SVSASHVWLA TEDGRLLRYA KPAGDESVLP DFGPRLALRR HGDGYLVDDP RRGTTAEFRP
VGDERGARSR LPLTAVRRHA GGELVVEHDG AGLPTRVRHS GGYEVAVDTD GGRVTGLRLT
SAARAITLTR YGYDETGQLA EVVNSSGLPL RFTHDADGRL TSWTDRNGVW YRYVYDDRGR
AVTTIGSSGA LNGTFRYEER RTTHTDTLGN ATTYDLDERG RVVRETNPLG AVTGREWGER
EQLLAVTDPL GRTTRYEHDD DGNVTTVTRP DGSTLTAAYT TGGRDTRVTD PAGGTWLRDH
DALGNLVAET DPTGATTRFA YDERGHLAAT TDPLGAVTRY RTDAAGLITE LTDPLGATTR
FERDAFGRVV AETDPLGGVT RTTWTVEGRI TSRTRPAGGV ERWAYDGEGN VVEHVDEVGQ
VTRTRYTHFD LPAARTAPDG ATTTYAYDTE LRLTEVVGPH GLAWRFERDA AGEVVRETDF
DGRVTRYAYD AAGRLAARVN GLGETISYDR DVHGGIVAKH TPSGTSAFDR DPCGRVVRAA
GPDVEVLFER DARGRVLAET CDGRTTRSEY DAAGRRVRRT TAGGVATGWD YDAAGNPVAL
RADGGTITFR HDALGRQVRR ELGRLSVLRS YSPDSRLTDQ LVTAGGPVDR RGWRYRPDGN
VDGVLDPSGG RALALDRRGR VLSVRGPGWD ERYEYDAVGN ITDASPSGPD DPTAGPRAHE
ANRLRAAGRT TYDHDAQGRV VRRRTRTLSG SVLVWTFGWD AEDRLTSAST PDGGTWRYRY
DPMGRRVAKQ RLDARGCPVE RLDFTWDGTL LAEHTGADGS GSTWEYEPGT TTPVAQLDRV
GLDRRFYAVV ADLVGSPTEL VDADGEVAWR RTATLWGRTL AQSGPATCPL RFPGQYHDGE
TGWHYNHLRH YDPDTGRYAS QDPLGLIPSI NPGAYVPNPI RFVDPLGLQG CGVSGDEARQ
QALADAGVPP GSEPLETRVT PSTTPGGRQV MQDHQPVFFP EEVYLNNRDE LIVFQDHYTG
HQFGEGGVGD QPPHVHVRPY DNPRNGQVPG AEEHYYYDPS LGRPTPAG
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