| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_4385 |
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| Symbol | |
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| ID | 8328582 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Actinosynnema mirum DSM 43827 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013093 |
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| Strand | - |
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| Start bp | 5182451 |
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| End bp | 5184133 |
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| Gene Length | 1683 bp |
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| Protein Length | 560 aa |
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| Translation table | 11 |
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| GC content | 75% |
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| IMG OID | 644944847 |
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| Product | Prenyltransferase/squalene oxidase |
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| Protein accession | YP_003102080 |
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| Protein GI | 256378420 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1657] Squalene cyclase |
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| TIGRFAM ID | [TIGR01787] squalene/oxidosqualene cyclases |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCTCGG TCCACGTCGA CCCGGACCCG TTCACGGACG TCCTAGACCG CGCCATCTCC
GAGGGCGCCG AGGCCCTGTT CCGCGCCCAG CGCCCGGACG GCGTGTTCGA CTACAGCGAG
GACAACCTCA CCTCCACCCT CGGCACCGTC GGCGCCCTGT CCGCCCTGCA CTACGCCGAC
CCCGAGGGCA GCGCCGACCT GATCGAGGCG GGCGCGGGCT GGTTGCGCCG CACCCAGAAC
GAGGACGGCG GCTGGGCCAT GGTCCCCGGC CTGCCCAGCG AGGCGGGCCC CACCGCCGTC
TCCTCCGCCG TGCTGCACCT GGTCGACCCG GTCGGCAGCG CCGCCCACGT CGAGTCCGGG
CAGCGCTGGA TGGGCGACCA CGGCGGCCTG GAGGCCATCC CGCACCCCGA GGTCGTCTCC
TGGTGCCGCC AGTACTACGG CTTCGTCGGC TGGCTCGCCC CCGAGGACAT GCGCCGCTTC
CCCCTGGAGC TGGCGCTGCT GCCCGGCCTC TACCGCAGGC TCTTCGACCT GCGCGTCCCC
ATGGCCTCCG CGCTCGGCCT GGCCCAGGCC AAGCACAAGC CGCTCAACCC GCTGCAGCGC
CTGTTCGCCC GCCTCGGCAC GCCGAACGCG CTCACCGCCA TCCGCCAGGT CTACGAGCAC
GAGGGCTCCA CCGGCGCGTG GTGCGAGAAC GCCTGGGTCA CCGGCCTGGT CTGCACCGGC
CTCGCCCGCG CCGACCTCGC CCCCGACATG GTCGCCGCCG CCGTCGGCTG GTTCCGCCGC
ACCATGGACC CCGACGGCTG GTGGCAGACC GGCCCGCTCG ACGCCGCCTG GACGATGTAC
GCGGTGCGCG GCCTCACCGA GGTCGGCTAC GCCGACGACC CCCGGCTCGT CGCCTCCAGG
GACCTGTTCA CGCGCCTGCA GCAGCACCGC CCGTTCCTGG CGTTCGGCTG CCCGCCCGGC
TACTGGGGCT GGGCGGGCAC CGAGGGCTGG CCGTCCACGC TGGAGACCGG CGAGATCCTG
TCCGTGCTGT GCAGGCTCCC CGGCGACGAG CAGGCGCACT CGGTCGAGCG CGGCGTCGAC
TGGCTCACCC GCGTGCAGGA CACCCGCGGC TCCTGGGGCC TGTGCGTGAA GAACACCAAG
GTCGCCAACA GCGGCCCGTG CCCCATGACC ACCGTGCAGG CCGTCGACGC GCTGCTCGAC
GCGGGCGTGC CCGCCACCGA CCCCAGGGTG CGCCGCGCCC TGACCTGGCT GGGGAAGGCC
CAGCTGCCGG ACGGCTCGTT CGAGTCGGTC TGGTACCGCC AGCACACCAT GGGCACCGCC
GCCGTCCTGG AGACCTTCTC CAGGGTCGGC CGCGCCGACG ACCCGGTCGC CCGCAAGGCC
GTGGCCTGGT TGGAGCGCGC CCGGCTCGAC GACGGCTCCT GGGGCGACGG CGCGGGCGCG
CCCGGCACGG TCGAGGAGAC CGGCTGGGCG GTGTCGGCGC TGCTCGCCTC CGGCGCGGAC
GCGGCCGGTC TGCGCACCGG CGTCGACTGG CTGCTCGCCC ACCGCGCGGA CGGCGGCGGG
TGGCCCTCGG AGATCGTCCA CGAGTACGTG CGGCACGTCA GCCGCTACAC CAACCCCGCG
TTCGCCCAGG GCATGGCGCT GCGCGCGCTG GGCCGCTACC GGGACGCGGT CGCCAAGCCC
TGA
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| Protein sequence | MTSVHVDPDP FTDVLDRAIS EGAEALFRAQ RPDGVFDYSE DNLTSTLGTV GALSALHYAD
PEGSADLIEA GAGWLRRTQN EDGGWAMVPG LPSEAGPTAV SSAVLHLVDP VGSAAHVESG
QRWMGDHGGL EAIPHPEVVS WCRQYYGFVG WLAPEDMRRF PLELALLPGL YRRLFDLRVP
MASALGLAQA KHKPLNPLQR LFARLGTPNA LTAIRQVYEH EGSTGAWCEN AWVTGLVCTG
LARADLAPDM VAAAVGWFRR TMDPDGWWQT GPLDAAWTMY AVRGLTEVGY ADDPRLVASR
DLFTRLQQHR PFLAFGCPPG YWGWAGTEGW PSTLETGEIL SVLCRLPGDE QAHSVERGVD
WLTRVQDTRG SWGLCVKNTK VANSGPCPMT TVQAVDALLD AGVPATDPRV RRALTWLGKA
QLPDGSFESV WYRQHTMGTA AVLETFSRVG RADDPVARKA VAWLERARLD DGSWGDGAGA
PGTVEETGWA VSALLASGAD AAGLRTGVDW LLAHRADGGG WPSEIVHEYV RHVSRYTNPA
FAQGMALRAL GRYRDAVAKP
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