Gene Amir_4225 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAmir_4225 
Symbol 
ID8328418 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameActinosynnema mirum DSM 43827 
KingdomBacteria 
Replicon accessionNC_013093 
Strand
Start bp4977378 
End bp4979276 
Gene Length1899 bp 
Protein Length632 aa 
Translation table11 
GC content74% 
IMG OID644944689 
Productglycoside hydrolase family 5 
Protein accessionYP_003101926 
Protein GI256378266 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2730] Endoglucanase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.366342 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGAGGTCTG GACCTATCGC ACTCATCGCC CTGCTGACCG CGTCGACCTT CACGGGCGCC 
CTGCCCGCCG CCGCCGCAGC CCCCGCCGAC CCCCTCCCCG CAGCCCTCTC CCCCGCAGTC
CCCTCCCCCG CCGCCGTCGC GCCCGCCGAC TGGAAGGCCC CGCTGAGCAC GCGGGGCCGG
CACGTCGTGG ACGCCGACGG CAACCGGTTC AAGCTCAAGT CCGGCAACTG GCACGGCGCC
AGCGGCACGT GGACGGGCTC CGGTTCCAAG TCCGACCCGG CGAACCACCA CGCCGGGGAG
ATCGCCCACC AGACGCCGCT CGGCCTGGAC CGGGCGCCGC TGGAGAGCGT CATCGACGGC
TTCGCCGAGC TGGGGCTCAA CAGCGTGCGC CTGCCGTTCT CCAACGAGAT GGTGCGCGAC
ACCGCCCCCG TGCCCGACCT GCCCGCGAAC CCGCAGCTGC GCGGCCTGAC CCCGCTCGGC
GTGTACGACC GGGTGGTGGA GCGGCTGACC GCGCGCGGGT TCGCGGTGAT CCTGAACAAC
CACACCGGGA CGTCCCGGTG GTGCTGCGGC GTCGACGGGA ACGAGCGGTG GAACACCGCG
CGCACCGAGG CGCAGTGGCA GGAGGACTGG CTGTTCATGG CGCGGCGGTA CGCGTCGAAC
AAGCGGGTGG TGGGCGCGGA CCTGTACAAC GAGGTCCGGC GCACCATCAC CGACGACCCG
AACTGGGGCT GGGGCAACGA CCACGACTGG CACCGCGCGA GCCAGCAGGT GGCGAACCGC
ATCCTGACCG AGGCCAACCC GGACCTGCTG GTGATCGTGG AGGGGATCAA CTGGACCGGG
CTGCCGGTCG ACGGGTTCCC GCACGGCAGG CCGACGCTGG AGCCGGTGCG GACGCTGTCG
CACGCGCTGG TGGAGTCGGA CAAGCTGGTG TACTCGGCGC ACTTCTACGG CTACACCGGG
CCGAACCACT CCGGGGCCAC CGGGATCGGC GAGACGACCG ACCCGAGGTA CCAGGACCTG
TCGCCGCAGG AGCTCAAGGA CGTGGTGCGG CGGCAGGCGC TGTACGTGTC GGCCGAGACC
GGGCAGCACT TCACCGCGCC GGTGTGGATC AGCGAGTTCG GGGTGGGCCG GGACAGCGCG
GCGAACACGC GGGACTGGTT CGAGCGGTTC GTGGACCTGC TGGTGGAGGC GGACGCGGAC
TTCGCGTACT GGCCGGTGGT GGGCAACGGC GAGTCGGGCA ACAACTGGTC GCTGCTGAAC
CTGGACCGGG ACGGGCGGCG GACGTCGGTG GACGCGGACT GGCGCGGCGC TGCGTGGCGG
CGGCTGGTCG GGTCGTCCGG GCGGACCGGC GTGGTGCCGG TCGGGGCGCG GTGGTCGATG
CTGAGCCTGG AGCACGCGGA CCTGGCGGCG TCGCGGGCGG CGCGCGGGTT GGGCGACTGG
GACTCGGGGG CGCGCAAGGG CGCGTGCGCG GACGGGCAGC GGCTGATCGG GCTGGCGGAG
GCGGGCGCGC GGGCGCTGTG CACCGGGGTC TCGGGCGCGC CGGGCGGGTT CGTGGTGGTG
CGCGGGGAGG AGAACGTGAC GCAGGACTGG GCGAGCGGGT ACACGAAGGT GCAGTGCCCG
GCGGACCACT ACGTCGCCGG CTACTCGGTG CGCGGCGGCG CGTTCTCGGC GGCCCTGTGC
GCCCGGTCGG GGACGGCGCT GGGCGGGGCG GGTCGGACGG TGTGGTTCGA CCGCGGCGAC
AGCAGGCCGG CCGGGAATCC GGGCGGGGAG TTCTCGCCGG GGAAGCACAA GGGGCAGTGC
GCGGAGAACG AGCACGTGGC GGGGATCGCC TGGACGGGGC GGATCTTCTC GGACAAGGGG
CCGGACGCGC TGCACTGCCG GGCTTCCGCG CCCCGGTGA
 
Protein sequence
MRSGPIALIA LLTASTFTGA LPAAAAAPAD PLPAALSPAV PSPAAVAPAD WKAPLSTRGR 
HVVDADGNRF KLKSGNWHGA SGTWTGSGSK SDPANHHAGE IAHQTPLGLD RAPLESVIDG
FAELGLNSVR LPFSNEMVRD TAPVPDLPAN PQLRGLTPLG VYDRVVERLT ARGFAVILNN
HTGTSRWCCG VDGNERWNTA RTEAQWQEDW LFMARRYASN KRVVGADLYN EVRRTITDDP
NWGWGNDHDW HRASQQVANR ILTEANPDLL VIVEGINWTG LPVDGFPHGR PTLEPVRTLS
HALVESDKLV YSAHFYGYTG PNHSGATGIG ETTDPRYQDL SPQELKDVVR RQALYVSAET
GQHFTAPVWI SEFGVGRDSA ANTRDWFERF VDLLVEADAD FAYWPVVGNG ESGNNWSLLN
LDRDGRRTSV DADWRGAAWR RLVGSSGRTG VVPVGARWSM LSLEHADLAA SRAARGLGDW
DSGARKGACA DGQRLIGLAE AGARALCTGV SGAPGGFVVV RGEENVTQDW ASGYTKVQCP
ADHYVAGYSV RGGAFSAALC ARSGTALGGA GRTVWFDRGD SRPAGNPGGE FSPGKHKGQC
AENEHVAGIA WTGRIFSDKG PDALHCRASA PR