| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_4171 |
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| Symbol | |
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| ID | 8328364 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Actinosynnema mirum DSM 43827 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013093 |
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| Strand | - |
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| Start bp | 4906592 |
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| End bp | 4908292 |
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| Gene Length | 1701 bp |
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| Protein Length | 566 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644944635 |
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| Product | Oligopeptide transporter OPT superfamily protein |
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| Protein accession | YP_003101872 |
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| Protein GI | 256378212 |
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| COG category | [S] Function unknown |
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| COG ID | [COG1297] Predicted membrane protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0154886 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGTCCCTTG ACTCCTCGAA GGACCCCGCG ACACCGACCA CCGGTGACGC CCCCGAGAAG
CACCCCAGGG CTTTCGAGCC CATCACGTTC GTGATCATCG CCCTGCTCAG CGTGCTCGGC
GCGATCATCG GCCTGCACAT GATCACCACC CTGGGCGTCT CGCCCAACAC CTCGGTGATC
GGCGCCCTGG TCGCCATGGT CGTGGGCCGC TTCGCCTTCC TGGGCCTGGC CAGGATGCGC
AGCGTCCACC GCCAGAACCT CGCCCAGTCC GCGATCTCCG GCTCCACCTT CGCCGCCGCG
AACTCGCTGC TGATCCCGAT GGCGATCCCG TTCGTCTTCG GCAAGCCCGA GCTGGTCTGG
CCGATCTTCA TCGGCGCGGG CCTCGGCCTG GCGATCGACG TGTGGATCCT CTACCGCGGC
TTCGGCTCCT CGTTCCTGCC CGCGCACGCC GCGTGGCCGC CCGGCGTCGC CGCCGCCGAG
ACCATCAAGG CCGGTGACTC CGGCGGCCGT CAGGCCAAGA TCCTGGCCGT GTCCGGAGTG
CTCGGCTTCG GCGCCAGCTT CGCGGGCCTG CCGATGTCCG CCGCCGGTGT CGCGCTGATC
GGCAACGTCT GGGCGCTCGG CATGTTCGGC GTCGGCCTCC TGGCCGCGCA GTACGCGCCG
GTGCTGTTCA ACGTCAAGCT GGCCGCGCTC TACGTGCCGC ACGGCGTGAT GATCGGCGCC
GGCCTGGTCG CCCTCGTCCA GGCAGCCCTG CTGCTCCTCG GCCGCCGCTC GAAGAAGTCC
GAGGCCAAGG GCCCCCGTGG GGAGGGCGCC GAGGAGAAGA AGGCCGCCGC AGCGAAGGCC
GACGGTTCCA GCGCGGTCCT CGAAGACGAT CCGTCCATGG TGGACACCGT CACCATCGGC
AAGCTCCGCC GCGCCTTCTC CACCGGCTAC CTCCTCTACG TCGGTGGCGC CGCGGTCCTG
GCAGTCCTCG CCGGGGTGTA CTCCGAGCTC TCCGTCCCCG CCCTGATCGG CTGGGTCCTG
TTCGCCGCGT TCGCCGCGAT CGTGCACGAG ATCATCGTCG GTCTGGCCGC CATGCACGCG
GGCTGGTTCC CCGCCTTCGC CGTCACCCTG ATCTTCCTGA TCGTCGGCCT GTTCCTGGGC
TTCCCCCAGG TTCCGCTCAT GGTCCTGGTC GCCTACTGCG CCGCCACCGG CCCCGCGTTC
GCCGACATGG GCTACGACCT CAAGGCGGGC TGGCTCCTGC GCCGCTCGCA CCGCCCGTAC
AGCGCCTTCG AGCTGGAGGG CCGCCGCCAG CAGCTCCTCG CCAGCGTCAT CGGCTTCGCC
GTCGCGGTCG GCGCCGTGGC CCTGCTGTGG CAGAGCTACT TCACCAACGG CGACATCCCG
CCCGTGTCGA AGGTCTACGC CGACACCATC AAGGCGGGCC TCGGCGACCC CGAGGTCCTG
CGCAACCTCC TGATCTGGGC CATCCCCGGC GCGATCATCC AGCTCATCGG CGGCCCCAAG
CGCCAGATCG GCGTCCTGCT CGCCACCGGC CTCCTGGTCG CCACCCCGAA CGCCGGCTGG
CTCGTCCTCG CCGCGCTCGC CCTGCGCGTC ATCTGGGTCC GCAAGCGCGG CCCCGAGGGC
GAGAACGACG CCGCCCTGGT CGGCGCGGGC CTCATCGCGG GCGACTCGAT CAACTCCGTC
GGGAGGATCT TCCGTGGCTG A
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| Protein sequence | MSLDSSKDPA TPTTGDAPEK HPRAFEPITF VIIALLSVLG AIIGLHMITT LGVSPNTSVI
GALVAMVVGR FAFLGLARMR SVHRQNLAQS AISGSTFAAA NSLLIPMAIP FVFGKPELVW
PIFIGAGLGL AIDVWILYRG FGSSFLPAHA AWPPGVAAAE TIKAGDSGGR QAKILAVSGV
LGFGASFAGL PMSAAGVALI GNVWALGMFG VGLLAAQYAP VLFNVKLAAL YVPHGVMIGA
GLVALVQAAL LLLGRRSKKS EAKGPRGEGA EEKKAAAAKA DGSSAVLEDD PSMVDTVTIG
KLRRAFSTGY LLYVGGAAVL AVLAGVYSEL SVPALIGWVL FAAFAAIVHE IIVGLAAMHA
GWFPAFAVTL IFLIVGLFLG FPQVPLMVLV AYCAATGPAF ADMGYDLKAG WLLRRSHRPY
SAFELEGRRQ QLLASVIGFA VAVGAVALLW QSYFTNGDIP PVSKVYADTI KAGLGDPEVL
RNLLIWAIPG AIIQLIGGPK RQIGVLLATG LLVATPNAGW LVLAALALRV IWVRKRGPEG
ENDAALVGAG LIAGDSINSV GRIFRG
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