Gene Amir_4131 details

Gene Information

• Locus tag: Amir_4131
• ID: 8328324
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Actinosynnema mirum DSM 43827
• Kingdom: Bacteria
• Replicon accession: NC_013093
• Strand: +
• Start bp: 4858782
• End bp: 4860689
• Gene Length: 1908 bp
• Protein Length: 635 aa
• Translation table: 11
• GC content: 73%
• IMG OID: 644944595
• Product: Mannan endo-1,4-beta-mannosidase
• Protein accession: YP_003101832
• Protein GI: 256378172
• COG category: [G] Carbohydrate transport and metabolism
• COG ID: [COG3934] Endo-beta-mannanase

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.0331155
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGACCGGTC CGGACGGCAG GCCCGACGTG TGGTTGGGGG TGAACTTCTG GTCCCGCGTC 
GGCGGTCCGC TGATGTGGCG GCGCTACGAC CCCGACGTGG TGCGCGCGGA GCTGCTGGTG 
ATGCGCGAGC ACGGCGTCCC GCTGACCAGG AGCTTCTGCT ACTGGCCGGA CTTCATGCCC 
GAGGAGGACC GGCTGGACGA GGTGGTGCTG GCCCGCTTCG ACCACTTCCT CGACCTGCAC 
CGGGAGCTCG GGATGCGCAC CATCCCGACG TTCCTGGTGG GCCACATGTC CGGCCAGAAC 
TGGGACCCGC CGTGGCGGCG CGGTCGGGAC GTGTTCGGCG ACGAGTCGTT CGTGGCGCGG 
CAGCGCTGGT ACGTGCGGGA GCTGAGCGCG CGCTGGAAGG ACCACCCGGC GGTCGCGGGG 
TGGTTGCTGG GCAACGAGAT CCCGCTGTAC GCGGACGAGC GCTCGCGCGG CGTCGGCACG 
CTCGACGCGG ACGTGGTGAC GGCGTGGGCG GACGCCCTGA TCGGCGAGGT GCGGGCGGCG 
GGGGCGCGGC AGCCGGTGTC GGTCGGCGAC GGCGCGTGGG GCGTGGAGGT CACGGGGCTG 
GACAACGGTT TCCGGGTGCG CGACCTGGCC CCGCTGGTGG ACTTCCACGG CCCGCACGTC 
TACCGCATGG AGGACGACCC GCTGCGGCTG CACCTGGCGG CGGCGTGGGT GTGCGAGCTG 
CTCGACGTCG GCGGGAGGCC GGTGGTGCTG GAGGAGTTCG GCGTCACCTC CGACTACACC 
TCGGACGAGA ACGCCGCGCA CTACTACCGG CAGGTGCTGC ACAACTCGCT GCTCGCGGGC 
GCGACGGGCT GGATCGCCTG GAACAACACG GACTTCGACG ACCTGGCCGA CCAGGAGCCG 
TACTCGCACC ACCCGTTCGA GCTGCACTTC GGCCTGACCA CCGCGCGCGG CGAGCCGAAG 
CCGCAGCTGC TGGAGCTGCG GGAGTTCGCG GAGGTGTTGC GGCGCACGGA CTTCGCGGGG 
TTGCGCAGGC CGGACGCGGA GGTGGCGCTG GTGGTGCCGT CGTATCTGGA GAAGCGCTAC 
CCGTTCACCA CGCCCGAGGA CGCGACGAGC GTGTTCGAGC ACGGGCGGCA GGCGTACGCG 
GCGGCGCGCG AGGCGGACCT GCCGGTGGGG GTGGCGCGCG AGGTGGACGG GGTGCCCGAC 
GACTGCGCGC TGTACCTGCT GCCGTCGGCG AAGCAGCTGC TGGCGCCCAC GTGGCGGGAG 
CTGCTGCGGC GGGCCTCGGA GGGGGCGGTG GTGTACGCGT CGTACTTCCA CGGGGCGCAC 
AAGGTGCAGC GCGGGTCGTG GTGGCCGGAC CTGGACGGGA TGTTCGGGGT GGCCAAGCGG 
TCCCGGTACG GGCTGGTGGA ACCGGTCGTG GAGGACGAGC TGCGGTTGCG GGTGGTGACC 
GGGTTCGGCG GGTTGGCGGT GGGCGAGGAG CTGGTGTTCG CGGTCGGTGG GAACGAGCAC 
TCGCGGGCGT TCCTGCCGGT GGACCCGGTG GAGGCCGAGG TGCTGGCGGT GGACGGTCGC 
GGGCGGCCCG CGCTGCTGCG GCGGCGGGTG GGGGCCGGGG CGATGGTGCT GTGCGCGTAC 
CCGTTGGAGC ACATGGCTTC CGCGACGCCG TCGGTGAACC CGGAGGACAC CTGGCGGTTG 
TACGCGGCGC TCGCGGCGGA GGCCGGGGTG GTGCCGGAGG TGTCGGTGGA CGATCCGGGG 
GTGCTGGTGT CGGTGCTGGA GCACGAGGAC GGGCGGCGGT TCGCGTGGCT GGTGAGCCAG 
CGCGGGGAGC CGGTGTCGGC GCGGGTGCTC GGGGCGGGGT TGCGGTCGTT CGGCGACGTG 
GTGGAGCTCG GCCCGTACGG GGTCGTGGTG GCGGAGGTGG AGCGGTGA 

 

Protein sequence

MTGPDGRPDV WLGVNFWSRV GGPLMWRRYD PDVVRAELLV MREHGVPLTR SFCYWPDFMP 
EEDRLDEVVL ARFDHFLDLH RELGMRTIPT FLVGHMSGQN WDPPWRRGRD VFGDESFVAR 
QRWYVRELSA RWKDHPAVAG WLLGNEIPLY ADERSRGVGT LDADVVTAWA DALIGEVRAA 
GARQPVSVGD GAWGVEVTGL DNGFRVRDLA PLVDFHGPHV YRMEDDPLRL HLAAAWVCEL 
LDVGGRPVVL EEFGVTSDYT SDENAAHYYR QVLHNSLLAG ATGWIAWNNT DFDDLADQEP 
YSHHPFELHF GLTTARGEPK PQLLELREFA EVLRRTDFAG LRRPDAEVAL VVPSYLEKRY 
PFTTPEDATS VFEHGRQAYA AAREADLPVG VAREVDGVPD DCALYLLPSA KQLLAPTWRE 
LLRRASEGAV VYASYFHGAH KVQRGSWWPD LDGMFGVAKR SRYGLVEPVV EDELRLRVVT 
GFGGLAVGEE LVFAVGGNEH SRAFLPVDPV EAEVLAVDGR GRPALLRRRV GAGAMVLCAY 
PLEHMASATP SVNPEDTWRL YAALAAEAGV VPEVSVDDPG VLVSVLEHED GRRFAWLVSQ 
RGEPVSARVL GAGLRSFGDV VELGPYGVVV AEVER