| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_4054 |
|---|
| Symbol | |
|---|
| ID | 8328247 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Actinosynnema mirum DSM 43827 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013093 |
|---|
| Strand | + |
|---|
| Start bp | 4765999 |
|---|
| End bp | 4766973 |
|---|
| Gene Length | 975 bp |
|---|
| Protein Length | 324 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 644944524 |
|---|
| Product | Helix-turn-helix type 11 domain protein |
|---|
| Protein accession | YP_003101761 |
|---|
| Protein GI | 256378101 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2378] Predicted transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.135242 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGCGAGCCG ACCGGCTGCT GTCGATGATG CTGCTGCTCC AGTCGCACGG CAAGCTGTCG
GCGCGCACCC TCTCCAAGCG CCTGGAGGTG TCCACCCGCA CGGTCATGCG GGACGTCGCG
GCCCTGTCCG CGACGGGCGT CCCGGTCTAC ACCGAGCGCG GCCCGAACGG CGGCATCGCG
CTGCTGCCGG ACTTCCGCAC CGACGTCACC GGCCTGACCG CCGAGGAGTC CAAGGCCCTG
TTCGTGCTGC TCACCGATCG CGCGCACGCC GACCTGGGCC TGGCCCCCGC GCTGCGCTCG
GCGCTGCGCA AGGTGATGGC AGCCCTGCCC GAGAACCACC GAGGGCAGGC CGAGGCCACC
AGCAGACTGG TGCTGGTGGA CCCCGCGCGC TGGCGCGGCA GGCGAGCACC GGCCCCGGAC
GCGCTGGCCC CGGTCCAGGA AGCGGTCTTC ACCGGCCGCC GCCTGCACCT GCGCTACCGC
GACGGCAAAG GCGCGCTGAC CACGCGCACC ACCGACCCGC ACGGCCTGGT CAACAAGGCG
GGCACCTGGT ACCTGGTGGC GAGCCACCGG GGCGCGCACC GCCTGTTCCG CCTGGACCGC
GTCCTGTCCG CGACGGTCCT GGACCAGCAG GCCCAGCGCT CACCCCACGA GCTCGCCGAC
CTGTGGGACC AGCTGCGCAA GCGCGTCGAC GAAGCCCCGG CCCCGCTTCT GGCGACCGCG
GCCGTGCGCC GCACGATCCT GCCCCGCTTC CTGGTGTTCC ACGCCCCGGA CCTGGACGGC
GACCCCGAGG ACCTGGACGA GGACCGCGCA CTGGTGCGCC TGCGCTTCCG CGCGGTGCCG
ATGGCCACGA CCCTGCTGTC GTTCGGCGCC GACGTGGAAG TGCTCGACCC ACCCGAACTG
CGCACCGAAC TCGCCGCCCG GGCCGCAGCC GTCACCGAGC TGTACCGGAC CGACCGACCA
CCTCCCGCCT CATGA
|
|---|
| Protein sequence | MRADRLLSMM LLLQSHGKLS ARTLSKRLEV STRTVMRDVA ALSATGVPVY TERGPNGGIA
LLPDFRTDVT GLTAEESKAL FVLLTDRAHA DLGLAPALRS ALRKVMAALP ENHRGQAEAT
SRLVLVDPAR WRGRRAPAPD ALAPVQEAVF TGRRLHLRYR DGKGALTTRT TDPHGLVNKA
GTWYLVASHR GAHRLFRLDR VLSATVLDQQ AQRSPHELAD LWDQLRKRVD EAPAPLLATA
AVRRTILPRF LVFHAPDLDG DPEDLDEDRA LVRLRFRAVP MATTLLSFGA DVEVLDPPEL
RTELAARAAA VTELYRTDRP PPAS
|
|---|
| |