| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_4046 |
|---|
| Symbol | |
|---|
| ID | 8328239 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Actinosynnema mirum DSM 43827 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013093 |
|---|
| Strand | - |
|---|
| Start bp | 4756880 |
|---|
| End bp | 4758670 |
|---|
| Gene Length | 1791 bp |
|---|
| Protein Length | 596 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 76% |
|---|
| IMG OID | 644944516 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_003101753 |
|---|
| Protein GI | 256378093 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGGCAC CAGCAGCGGA GCGCACGCCG ACCGGGGAAC GGCCCGACCC TCCGCCGCCG
CCCCAGGACG AACCCGACGA CCCCCGCCTG GCCGCCGCCG CGCTGAGCGA GCTGCGCCGC
CCCGTCGCGG GCCGCACCCG CCTCGCCGTC GCCCTCGCCG CCGTCGGCGC GCTGGCCGCC
CTCGTGCCCT TCGCCGGACT GGCCGCGCTC GGCGACCTGC TCCTCGCCGA CGGCCCGCTG
GACCGCCCCG CCGTGGTCGC CGTCGCGGCG GGACTGCTCG CCAGGGGCCT GCTCCTGGGC
GCGGCCCTGA CCATCACGCA CTTCGCCGAC GTCGACCTCC AGGCGCACCT GCGCCGCCGC
ATCGTGCGCA GGCTCGGCCG GGTCCCGCTC GGCTGGTTCG GCGAGCACAG CTCCGGCTCC
GTGCGCAAGG CGGCCCAGAA CGACATCGCC GCGCTGCACC ACCTGATCGC CCACCACGCC
GTGGAGACCA CCGCCGCCAC CGTCCTGCCA CTGGGCGGCC TGGCCTACCT GCTCTGGCTG
GACTGGCGGC TCGCGCTGCT CGCGCTGGGC ACCCTGCCGC TGTACGCGCT GGCCTACGCC
TGGATGATGC GCGGCTACCG GGAGAAGGCC GCCCGGCTCG ACGCCGCCAC CGCGCGCATC
AGCTCCGCCG TGGTCGAGTT CGTCACCGGC ATCGGCGTCG TCAAGACCTT CGGCCGCGCC
CGCCGCGCCC ACGACGCCTA CCGCGAGGCC GCCGAGGAGT TCGGGAACTT CTACGCCGAC
TGGGTCCGCC CCATGCTGCG CGTGGAGGCC CTCAGCTCGA TGCTGATCTC CGCGCCCGTC
GTCGGCCTGC TCAACCTGCT CGGCGCCGTC TGGTTCACCG CCCAGGGCCG GGTCACCCCG
GTCGACGCCC TGACCGGGTT CCTCATCGCC CTGGTCATCC CCACGACCGC GGTCGCCCTC
GGCTTCGGCG CGCAGGACCG CCGCACGGCA GCCGCCGCCG CGCTGCGCCT GCGCGCCCTG
CTGGACACCC CCGAGCTGCC CGTCGCCGCC GAACCCCGCG TGCCGGCGGG CGGCGCGGTC
GAGTTCGACG ACGTCCGGTT CGGCTACGGA CCCGGCAGCG AGGTGCTGCG CGGCGTCGAC
CTCGACCTGG CCCCCGGCAC GGTCACCGCG CTCGTCGGCC CGTCCGGCGC GGGCAAGTCC
ACCCTGGCCA CCCTGCTGCC CCGGTTCCAC GACGTGACCG GCGGCGCGGT GCGCGTCGGC
GGCGTGGACG TGCGCGAGGT CGACCCCGAG GAGCTCTACC GGTCCGTCGG GTTCGTGCTC
CAGGACGTGG CGCTGGTGCA CGGCACCGTC GCCGACAACA TCCGCCTCGG CCGCCCCGAC
GCGACCGACG ACGAGGTGGT CGCCGCCGCA CGGGCCGCCC AGATCCACGA CCGCGTGCTC
CAGCTCCCCG AGGGCTACGG CGCCGTCGAC GCGCTCCTCT CCGGCGGCGA GGCCCAGCGC
GTCGCCATCG CCCGCGCCCT GCTCGCCGAC ACGCCCGTGC TCGTCCTGGA CGAGGCCACC
GCGTTCGCCG ACCCCGAGTC CGAGGCCGCC GTGCAGGACG CCCTCTCGGA ACTGGCGCGC
GGACGCACCC TGCTGGTCAT CGCGCACCGC CTGCGCACCA TCGCGGGCGC CGACCAGATC
GCCGTCCTCG ACGGGGGCGT CGTCGTCGAG CGCGGCGCGC ACGACGACCT GCTCGCCCTC
GGCGGGAAGT ACGCGCGGAT GTGGACCGCG CAGGAAGGGG AGCAGCGGTG A
|
|---|
| Protein sequence | MTAPAAERTP TGERPDPPPP PQDEPDDPRL AAAALSELRR PVAGRTRLAV ALAAVGALAA
LVPFAGLAAL GDLLLADGPL DRPAVVAVAA GLLARGLLLG AALTITHFAD VDLQAHLRRR
IVRRLGRVPL GWFGEHSSGS VRKAAQNDIA ALHHLIAHHA VETTAATVLP LGGLAYLLWL
DWRLALLALG TLPLYALAYA WMMRGYREKA ARLDAATARI SSAVVEFVTG IGVVKTFGRA
RRAHDAYREA AEEFGNFYAD WVRPMLRVEA LSSMLISAPV VGLLNLLGAV WFTAQGRVTP
VDALTGFLIA LVIPTTAVAL GFGAQDRRTA AAAALRLRAL LDTPELPVAA EPRVPAGGAV
EFDDVRFGYG PGSEVLRGVD LDLAPGTVTA LVGPSGAGKS TLATLLPRFH DVTGGAVRVG
GVDVREVDPE ELYRSVGFVL QDVALVHGTV ADNIRLGRPD ATDDEVVAAA RAAQIHDRVL
QLPEGYGAVD ALLSGGEAQR VAIARALLAD TPVLVLDEAT AFADPESEAA VQDALSELAR
GRTLLVIAHR LRTIAGADQI AVLDGGVVVE RGAHDDLLAL GGKYARMWTA QEGEQR
|
|---|
| |