| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_3994 |
|---|
| Symbol | |
|---|
| ID | 8328187 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Actinosynnema mirum DSM 43827 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013093 |
|---|
| Strand | + |
|---|
| Start bp | 4677708 |
|---|
| End bp | 4679381 |
|---|
| Gene Length | 1674 bp |
|---|
| Protein Length | 557 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 75% |
|---|
| IMG OID | 644944467 |
|---|
| Product | TAP domain protein |
|---|
| Protein accession | YP_003101704 |
|---|
| Protein GI | 256378044 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGCGGAACA AGGTATCCGT TCTCCTGGCG GCGACGCTCG CGTTGACCGC CGCGCCACTC
GCCCACGCCG GACCGGCCGA TCCGGTCGAT CCGGTCGATC CGGCGGGGAA GTACGCGGAC
CAGGCCGTCA CCTGGGGCGA GTGCGCGTTC ACCCCCACCG CGCCGCTGGA GTGCGCGCTG
ATCACCGTGC CGAGGGACTG GGCGGACCCC GGTTCCGGCG CGGAGCTGGA GGTGTCGATC
AGCCGGAGCC GGGCGACCGG CGAGCGCAGG GGCGCGATGC TGGTCAACCC CGGCGGACCC
GGCGGCCAGG GCACCGGGCT CGCGGGCGAT CTGGCCGCGC TCGCGCCGGA CCTGGGCGGG
GCGTACGACC TGATCGGCAT GGACCCGCGT GGCACCGGGC AGCAGGGCGT CGCGGGCAGC
GCGTTCACCT GCGACGTGCC CACCGACCGG CTGCCCACCG GGCCGCTCGA CGCGCGGGAC
CGCTCGGCGG CCAGCCTCGC CGAGCACGCG AAGGAGCCCA GGGCGGTCGC CGAGTCCTGC
CAGAGCGACG CCCGCACCCC GTACGTCACC ACCTGGCAGA CCGCGCACGA CGTGGACCTC
GTGCGCGCGC TGCTGGGCGA GGAGCGGTTG CACTACCTGG GGTACTCGTA CGGCTCGTGG
CTGGGCGCGA AGTACGCGTC GCTGTTCCCG GACCGGGTCG GCAAGGTCGT GCTGGACTCC
AGCGTGAACT GGCAGGGCAG GTTGCAGGCG GCGTTCGAGG CGTGGCCGGA GATCGGCGAC
CGGCAGCTGA CGCAGCAGTA CTTCCCGTGG CTGGCCAGGC AGTTCCCGGA CGCGGTGGGC
GACGACCCGC GCGGCGCGTG GGAGCGGGCG CGGAAGGTGT ACGCCGAGCA GGGCGTGGCG
CCGGACGCGT ACGACCGGAT CTTCGTCGGC ATGGGCAACG AGCTGGTCTG GCTGCTGTCG
GCGGCGGTCC TGGTCGCGGC GCTGGGCGAG GAGCCCGAGG TCCCGGAGGC GCTGCGGGCG
CGGCTGGACG AGGTGTCGGT GCGCGAGTTC GGCGTGCCGC TGGGCGGGCT GACGCCGGCG
AAGGTGGCCG AGGAGCTGGC GGACTACACC TCGTACCCCG GCACGTACTA CGCGGTGACC
TGCGGCGACG AGGTGACCAG GACGGCGGCG CAGAACAAGG CGCTGAGCGA CCGGCAGGGC
CCGAGGTGGC CGGTGTTCGG CTGGGCGTAC GGGCTGTGGC AGGCGTGCGG CCACTGGAGC
GAGGCCCCCC GCCAGCAGCT GCCGACCCTG CCGCCGCAGG TGGCGGACCG GGTGCTGGTG
GTGCAGTCCG AGTTCGACCC GCAGACCGGT TACGAGCAGG CCCGCGCCGC CGTGCGGGCC
GCGCCAGGGG TCGGTTTCGT GCAGGTGGCC GACTCCACCA CGCACGGCCA GTACGTGGTG
GACGGCAACC CGTGCGTGGA CGGCGCGGTG AACGTGTTCC TGCTGCGCGA CTCGCGGCCG
GGCCGGATCA CCTGCCCCGG TCTGCCGCTG CCCGGTGAGG ACCGGGTGTT CCCGGCGGAC
GGTCCGGTCC GGGACGCGGT GAGCGCCCCG ATGACGGCCG GGTCGGCGCC GTCCGGCGAT
CCCGCGCTGC GGGCCGGGGT GCAGGAGCGC ATCGGCGCCG GTTTCCGGCG CTGA
|
|---|
| Protein sequence | MRNKVSVLLA ATLALTAAPL AHAGPADPVD PVDPAGKYAD QAVTWGECAF TPTAPLECAL
ITVPRDWADP GSGAELEVSI SRSRATGERR GAMLVNPGGP GGQGTGLAGD LAALAPDLGG
AYDLIGMDPR GTGQQGVAGS AFTCDVPTDR LPTGPLDARD RSAASLAEHA KEPRAVAESC
QSDARTPYVT TWQTAHDVDL VRALLGEERL HYLGYSYGSW LGAKYASLFP DRVGKVVLDS
SVNWQGRLQA AFEAWPEIGD RQLTQQYFPW LARQFPDAVG DDPRGAWERA RKVYAEQGVA
PDAYDRIFVG MGNELVWLLS AAVLVAALGE EPEVPEALRA RLDEVSVREF GVPLGGLTPA
KVAEELADYT SYPGTYYAVT CGDEVTRTAA QNKALSDRQG PRWPVFGWAY GLWQACGHWS
EAPRQQLPTL PPQVADRVLV VQSEFDPQTG YEQARAAVRA APGVGFVQVA DSTTHGQYVV
DGNPCVDGAV NVFLLRDSRP GRITCPGLPL PGEDRVFPAD GPVRDAVSAP MTAGSAPSGD
PALRAGVQER IGAGFRR
|
|---|
| |