Gene Amir_3976 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAmir_3976 
Symbol 
ID8328169 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameActinosynnema mirum DSM 43827 
KingdomBacteria 
Replicon accessionNC_013093 
Strand
Start bp4660107 
End bp4660841 
Gene Length735 bp 
Protein Length244 aa 
Translation table11 
GC content74% 
IMG OID644944450 
Productshort-chain dehydrogenase/reductase SDR 
Protein accessionYP_003101687 
Protein GI256378027 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAACGTTC TTGAGGGCAA GGTCGCGGTC GTGACCGGGG CGAACGCGGG CATCGGCCTG 
GCGATCGCGC GGGCCTACCA CGCCGAAGGC GCGCGGGTCT TCGTCACCGG CCGCCGCCAG
GCCCAGCTCG ACGCGGTCGA GGCCGAGCTG GGCCAGGGGG TGACCGGCGT CCGCTGCGAC
GTCGGCGACC TGGCCGACCT CGACGCGCTC TACGCGCAGG TCGCGGAGCG GGCCGGGCGG
ATCGACGTGC TCGTCGCCAA CGCCGGGATC GGGATCACCG CCCCGCTGGG CGAGATCACC
GAGGAGCAGT TCGACGCCAT GTTCACCACC AACGTCAAGG GCTCGCTGTT CACCGTGCAG
AAGGCGCTGC CGCTGCTGGC CCCCGGCGCG TCGATCATCT TCACCGGGTC GTCGTCCGCC
ACCCGCCCGC AGCCGTACCT GCCGGTGTAC GGGGCGACCA AGGCCGCGAT CCGCAACCTG
GTCCGGGGCT TCGCCCACGG CGCGGGGGCG GGCGGGTACC GGGTCAACGT GCTCTCCCCC
GGCGGCACCC GCACCCAGGG CCTGGTCGAC CTGCTCCCGC CCGAGGAGCT GGCCGCCGCG
GGCGCGTCGA TCCCGCTCGG CAGGCTGGCC GAGCCCGAGG AGATCGCGGC GGCGGCGGTC
TTCCTGGCCT CGGACGCCTC CAGCTACGTC AACGGCGCCG AGCTGGCCGT CGACGGCGGG
GCCGCCCAGA TCTGA
 
Protein sequence
MNVLEGKVAV VTGANAGIGL AIARAYHAEG ARVFVTGRRQ AQLDAVEAEL GQGVTGVRCD 
VGDLADLDAL YAQVAERAGR IDVLVANAGI GITAPLGEIT EEQFDAMFTT NVKGSLFTVQ
KALPLLAPGA SIIFTGSSSA TRPQPYLPVY GATKAAIRNL VRGFAHGAGA GGYRVNVLSP
GGTRTQGLVD LLPPEELAAA GASIPLGRLA EPEEIAAAAV FLASDASSYV NGAELAVDGG
AAQI