| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_3958 |
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| Symbol | |
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| ID | 8328151 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Actinosynnema mirum DSM 43827 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013093 |
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| Strand | - |
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| Start bp | 4640945 |
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| End bp | 4642042 |
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| Gene Length | 1098 bp |
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| Protein Length | 365 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644944434 |
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| Product | Pectate lyase/Amb allergen |
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| Protein accession | YP_003101671 |
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| Protein GI | 256378011 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG3866] Pectate lyase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGCGAT CAGTCGTCCG GCGAATCCCC GCGGTCGTGG CCGCGCTGCT CGTCTCGACC
ACCGCGGGCG CCGCCCTCAC CGCCGGGTCG GCCTCCGCCG CGGGCGCCGC GACCGGGTAC
GCCTCCGCCA ACGGCGGCAC CACCGGCGGC CAGGGCGGGG CGACGGTCCG GGCCACCACG
GGCACCCAGA TCCACCAGGC GCTGTGCGGC CGGGCCGGCA CGAGCACCCC CATCACCATC
GAGGTGCAGG GGACCATCAA CCACGGCAAC ACCAGCAAGG TCTCCGGAAG CTGCGACACC
GCCGCCGGGG TCATCGAGCT CAAGAAGATC AGCAACGTCA CGATCATCGG CGTCGGCTCC
GGCGCGGTGT TCGACCAGAT CGGCATCCAC ATCCGCGAAT CCCGCAACAT CATCATCCGG
AACGTGACGA TCCAGAACGT CAAGAAGTCC GGATCGCCCA CGTCCAACGG CGGCGACGCC
ATCGGCATGG AGCGGGACGT GCGCAACGTG TGGGTCGACC ACGTCAACCT GATCGCCTCG
GGCGGCGAGT CGGCGGGGTA CGACGGGCTT TTCGACATGA AGGACAACAC CCAGTATGTG
ACCCTGTCCT ACAGCACCCT GCGCAATTCC GGTCGCGGCG GTCTGGTCGG TTCCAGCGAG
AGCGACCGCT CGAACAGCTT CATCACCTAC CACCACAACC TGTACCAGAA CATCGACTCC
CGGACCCCGC TGCTGCGCGG CGGCACGGCG CACATGTACA ACAACAACTA CGTGAGCCTG
AACGAGTCCG GCATCAACTC GCGCGCGGGC GCGAAGGCCA AGGTCGAGAA CAACTACTTC
AAGAACTCCC GCGACGCCCT CGGCACCTTC TACACCGACG AGGCGGGCTA CTGGCAGGTC
AGCGGGAACA CGTTCGACAA CGTCACCTGG TCCACCCCGG ACGACGAGAC CAACCCGGCG
GGGCCGAACC CGCAGTCCAC CACCTCGGTC ACCGTGCCCT ACAGCTACCG GCTCGACCAG
ACGAGCTGCG TGCCGACCAT CGTCGCCCGC ACGGCGGGGG CCAACACGGG CCTGAAGGAG
TCGGACGGCT CCTGCTGA
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| Protein sequence | MKRSVVRRIP AVVAALLVST TAGAALTAGS ASAAGAATGY ASANGGTTGG QGGATVRATT
GTQIHQALCG RAGTSTPITI EVQGTINHGN TSKVSGSCDT AAGVIELKKI SNVTIIGVGS
GAVFDQIGIH IRESRNIIIR NVTIQNVKKS GSPTSNGGDA IGMERDVRNV WVDHVNLIAS
GGESAGYDGL FDMKDNTQYV TLSYSTLRNS GRGGLVGSSE SDRSNSFITY HHNLYQNIDS
RTPLLRGGTA HMYNNNYVSL NESGINSRAG AKAKVENNYF KNSRDALGTF YTDEAGYWQV
SGNTFDNVTW STPDDETNPA GPNPQSTTSV TVPYSYRLDQ TSCVPTIVAR TAGANTGLKE
SDGSC
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