Gene Amir_3949 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAmir_3949 
Symbol 
ID8328142 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameActinosynnema mirum DSM 43827 
KingdomBacteria 
Replicon accessionNC_013093 
Strand- 
Start bp4630322 
End bp4630954 
Gene Length633 bp 
Protein Length210 aa 
Translation table11 
GC content74% 
IMG OID644944425 
Producttranscriptional regulator, TetR family 
Protein accessionYP_003101662 
Protein GI256378002 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.0865952 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGGGGAAG GTTTGCGCGA CCGCAAGAAG CGGCTGACCA GGCAGGCGCT GGCCGACGCC 
GCGCTCGACC TGGTCGCCGA GCGCGGGCTC GACGGCATCA CCGTCGAGGA CATCGCCGCA 
GCCGCGGGCG TCTCCGCCCG CACGTTCTTC AACTACTTCG CCACCAAGGA AGAGGCCCTC 
CTCGGGCCCG ACCCCGACGC GGGCCCGCGC CTGGCCCGCC GCATCCTCGA CCAGCCCGCC 
GACCTCGCCC CCCTCGCCGT GCTGCGCGCC GCCCTCCTGG CCGAACTGGC CGAGGAGACC 
GCGGGCCGTG ACGAGTGGCT GCGCCGGATG CGCGTCATCG AGCAGAACCC CGTGCTGCTG 
CCCAAGGTCC TCGCGGCGGG CGAGCAGGTC GAGCGGCACA TGGTCCGCGC CCTCGCCGAG 
CGCACCGGGC ACGCCGAGAC CGACGCCCAC CCCATGCTGC TCGCCGCCTC CGCCAACACC 
GCGTTCCGCG TCGCCGCCTG GCGCTGGGCC AGCTGGCCCG CCACCGGCGA CGCCCCCCAG 
CTCACCGACC TGATCGCCGA GGCCTTCGAC CTGCTGGCCT GCGGCTTCGC CCTCCCCAAA 
ACCCCGCACC ACCGATCCGA CGAGGAAAGA TGA
 
Protein sequence
MGEGLRDRKK RLTRQALADA ALDLVAERGL DGITVEDIAA AAGVSARTFF NYFATKEEAL 
LGPDPDAGPR LARRILDQPA DLAPLAVLRA ALLAELAEET AGRDEWLRRM RVIEQNPVLL 
PKVLAAGEQV ERHMVRALAE RTGHAETDAH PMLLAASANT AFRVAAWRWA SWPATGDAPQ 
LTDLIAEAFD LLACGFALPK TPHHRSDEER