| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_3948 |
|---|
| Symbol | |
|---|
| ID | 8328141 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Actinosynnema mirum DSM 43827 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013093 |
|---|
| Strand | - |
|---|
| Start bp | 4628751 |
|---|
| End bp | 4630325 |
|---|
| Gene Length | 1575 bp |
|---|
| Protein Length | 524 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 644944424 |
|---|
| Product | drug resistance transporter, EmrB/QacA subfamily |
|---|
| Protein accession | YP_003101661 |
|---|
| Protein GI | 256378001 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.448257 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCGACA CCGCTGTACC CGCGACCGGG GCCCCGAGCA CCTCGCGCCG CGACGTCATC
CAGGCGATGA CGGGCCTGAT GCTGGGCATG TTCGTGTCCA TCCTGGCCTC GACCGTCGTC
TCGAACGCCC TGCCGCGCAT CATCTCCGAC CTCGACGGCT CGCAGTCCGT CTACACCTGG
GTCGTCACCG CCGAGCTGCT CGCGATGACC GCCACCGTCC CCCTGTGGGG CAAGCTCGCC
GACCTCTACA GCCGCAAGCT GCTCATCCAG CTCTCCCTCG GCCTGTTCGT GGTCGGCTCG
CTCCTGGCGG GCTTCTCGCC GAACGTCGAG GTGCTGATCG TCAGCCGCGT CGTCCAGGGG
CTCGGCGCGG GCGGCATGAC CGCGCTGTCC ACCATCGTGA TGGCCGCGAT GATCCCGCCG
CGCGAGCTGG GCCGCTACGC CGGTCTGTTC GGCGCCGTCT TCGGCATCGG CACCGTCGCC
GGCCCGCTCA TCGGCGGGTT CCTGGTGGAC ACCTCGTGGC TGGGCTGGCG CTGGTGCTTC
TTCATCGGCG TCCCGTTCAC CCTGGCCGCG ATCGTGCTGC TCCAGCGCAC CCTGCACCTC
CCGCTGGTGC GCAAGGACTC CGTCCGGATC GACTACCTGG GCGCGGCGCT GATCACCGGC
GGCGTCTCCA CCCTGCTGAT CTGGTCCACG CTCGCGGGCG GCTCGTTCGA GTGGGTCTCC
GCCTGGTCCG CCGTGCTGGT CGGCGGCGGC GTGCTGCTGC TGGCTCTGGC CGTGTGGGTC
GAGTCCCGCG CCGCCGACCC CGTGGTGCCG CTGCGCCTGT TCGCCAACCG CACCGTCAGC
CTCACCACCA TCGCCAGCGT CCTGGTGGGC GTGGCGATGT TCGGCGGCAC GGTGTTCCTG
TCGCAGTACT TCCAGATCGG CCTCGGCAAG ACCCCCACCC AGGCCGGTCT GATGAGCCTG
CCGATGGTGT TCGGCCTGTT CCTGTCGTCC ACGATCGCCG GTCAGCTGAT CACCAAGTGG
GGTCGCTGGA AGGTGTTCCT GGTCGCGGGC GCCGCGATCA TGGTCGTGGG GATGCTGCTG
CTGTCCACGA TCGACGCGAA CACCACCGTG CTCGTGGTCG GCGTGCACAT GGCCGTGCTC
GGCGTCGGCG TCGGCATGGT GATGCAGAAC CTGGTGCTGG CCGCGCAGAA CGACGTGCCC
GCCAAGGACC TCGGCGCGAC CACGTCCACG CTGACCTTCT TCCGCAGCCT CGGCGGCTCG
ATCGGCGTGA GCGCGCTGGG CGCGGTGCTG GCCAACCGGG TGTCCACGCT GATGACCGAG
AAGCTCACCG CGCTGGGCGT GCCCGCCGAC ATGCTCGCCA GCGGCGGCGG CCACACGGCG
GTGCCCGACC TGTCGGCGCT GCCGGAGCCG ATCCGGCTGG TGGTGCGCGA CGTGTACGCC
ACGGCCACCG CCGAGCTGTT CCTGATCGGC GCGCCGATCG CCGCGATCGC GCTGCTCGCG
GTGCTGTTCA TCAAGGAGAA GCCGCTCAAG GAGCAGAGCG GCGACGAGCG GCTCGCCGCG
GAGCTGCCGC ACTGA
|
|---|
| Protein sequence | MTDTAVPATG APSTSRRDVI QAMTGLMLGM FVSILASTVV SNALPRIISD LDGSQSVYTW
VVTAELLAMT ATVPLWGKLA DLYSRKLLIQ LSLGLFVVGS LLAGFSPNVE VLIVSRVVQG
LGAGGMTALS TIVMAAMIPP RELGRYAGLF GAVFGIGTVA GPLIGGFLVD TSWLGWRWCF
FIGVPFTLAA IVLLQRTLHL PLVRKDSVRI DYLGAALITG GVSTLLIWST LAGGSFEWVS
AWSAVLVGGG VLLLALAVWV ESRAADPVVP LRLFANRTVS LTTIASVLVG VAMFGGTVFL
SQYFQIGLGK TPTQAGLMSL PMVFGLFLSS TIAGQLITKW GRWKVFLVAG AAIMVVGMLL
LSTIDANTTV LVVGVHMAVL GVGVGMVMQN LVLAAQNDVP AKDLGATTST LTFFRSLGGS
IGVSALGAVL ANRVSTLMTE KLTALGVPAD MLASGGGHTA VPDLSALPEP IRLVVRDVYA
TATAELFLIG APIAAIALLA VLFIKEKPLK EQSGDERLAA ELPH
|
|---|
| |