Gene Amir_3857 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAmir_3857 
Symbol 
ID8328049 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameActinosynnema mirum DSM 43827 
KingdomBacteria 
Replicon accessionNC_013093 
Strand+ 
Start bp4521705 
End bp4522241 
Gene Length537 bp 
Protein Length178 aa 
Translation table11 
GC content74% 
IMG OID644944344 
Productlipoprotein signal peptidase 
Protein accessionYP_003101582 
Protein GI256377922 
COG category[M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0597] Lipoprotein signal peptidase 
TIGRFAM ID[TIGR00077] lipoprotein signal peptidase 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.0363332 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGCAGCTCG ACGCGAAGAC CACCCGCCCC ACCGGCCGCG CGGCGCTGTT CACGATCGCG 
GCGGTGGGCG CGGTCGTGGA CCTGGCGGCC AAGGTCCTGG CCGAGCGGAA CCTGCTCGAC 
GGCCCGGTCG ACCTGGGCCC GCTCCAGCTG CGCCTGCTCC ACAACGAGGG CGTGGCGTTC 
AGCCTGGGCT CGTCGCTGCC CGCGTGGGTC GTGACGGTGG TGACGGCGCT GATCACCCTC 
GGCGTGGCCC TGTACGCCCA CCGCACCGCC CCGACCACCC CGCGCTGGGG CCGGGTCGCG 
CTGGCGCTGG TGCTGGGCGG CGCGGTCGGG AACCTGGTGG ACCGGGCGTT CGACGGCGCG 
GTCACCGACT ACTTCCACAC CGGCTGGTTC GCGACGTTCA ACGTGGCCGA CGTGCTGATC 
AGCGCGGGCG CGGTCCTGCT GGTCCTGGTC ACGCTGCTCA CCCCGGAACC GAAGCCCGAC 
CCGGAACCGG AACCGGAGCC GGGCTCGACC CCCGAGCCGG AACCCGCCGA GCGCTAG
 
Protein sequence
MQLDAKTTRP TGRAALFTIA AVGAVVDLAA KVLAERNLLD GPVDLGPLQL RLLHNEGVAF 
SLGSSLPAWV VTVVTALITL GVALYAHRTA PTTPRWGRVA LALVLGGAVG NLVDRAFDGA 
VTDYFHTGWF ATFNVADVLI SAGAVLLVLV TLLTPEPKPD PEPEPEPGST PEPEPAER