| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_3852 |
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| Symbol | |
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| ID | 8328044 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Actinosynnema mirum DSM 43827 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013093 |
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| Strand | + |
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| Start bp | 4517443 |
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| End bp | 4518618 |
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| Gene Length | 1176 bp |
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| Protein Length | 391 aa |
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| Translation table | 11 |
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| GC content | 75% |
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| IMG OID | 644944339 |
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| Product | putative PAS/PAC sensor protein |
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| Protein accession | YP_003101577 |
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| Protein GI | 256377917 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG2208] Serine phosphatase RsbU, regulator of sigma subunit |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.83404 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGACCAGAC CCTCCGACCA GCGCGTGGCG CCGGACGTGG ACGGCGAGGA CGCCGCCGTC
GCGTTCTCCG CGCTGCTGGA GGACAGCGTC GAGGACCTGT ACGACCGCGC GCCGTGCGGG
TACCTGTCCA CGCTGCTGGA CGGCGAGATA GCCAAGGTCA ACTCGACGCT GCTGGACTGG
CTCGGCTACC GGCGCGAGGA GCTGGTGGGC CGCCGGTACC TGGTGGACCT GCTGACCGTG
GGCGGCAAGC TGTACCACGA GACGCACTAC GCGCCGATGC TGCGGATGCA CGGGCAGGCG
CGGGAGATCG CGCTGGACCT GGTCGCCGCC GACGGGCAGC GGCTGCCGGT GCTGGTGACC
GCGCAGGTCA AGAACGGCTC GGACGGGCAG CAGCAGCTGA TCCGGCTGAC CGTGTTCGAC
GCGCGGGAGC GGCGCTCGTA CGAGCGGGAG CTGGTGCGGG CCAGGCAGGA GGCCGAGCGG
GACCGGGAGC AGCACCGCAG GCTCACCGAG GCGCTGCGCC GCACCCTGCT GCCGCCGACC
CTGCCGTCGC TGCCGGGTCT GGAGGTGGCC GCGCACTACC GGGCGGCGAA CTCCGACGAG
GTCGGCGGCG ACTTCTACGA CGTGTACCCG CTGTGCGGCG GGGACCGGCT GGGGTTCTTC
GTCGGCGACG TGAGCGGGCG CGGACCGGCG GCGGCCGAGC TGACCTCGGT GGCCCGGTAC
GCGCTGCGCG GGGCCGCGAT CACCGAGTCC GGGCCGTCGG CGGCGCTGGG CAGGCTGAAC
GAGGTGCTGC GCGGGCAGCG CGACGGGGTT CCGGAGTTCT GCACGGCCGT GGTGGGCGTG
CTGCGGCCCG TGGACGACGG GTTCGCGCTG GCGCTGGCCA GCGGCGGGCA CCCGCCCGCG
CTGGTGGTGC GCGCGGACGG CGCCGTGGAG GTGCTGCACA CGCCCGGCGC GCAGCTGGTG
GGGCTGCTGG CCGCGCCGAG GTTCACCCGC CGCACCGCGC GGCTCGCGGT GGGCGACGTG
CTCGTGCTGC ACACCGACGG GCTCGGCGAC GACCTGCTCG ACGGGGTGCG GCCGGGGTCG
GCGCGGGACG TGGTGGACGA GCTGGCCGAG CGGTTGGCGG GCAGCGGCGG CAAGGACGAC
GCTGCGGTGC TCGCGTTCGG GGTGGGACCG GCGTGA
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| Protein sequence | MTRPSDQRVA PDVDGEDAAV AFSALLEDSV EDLYDRAPCG YLSTLLDGEI AKVNSTLLDW
LGYRREELVG RRYLVDLLTV GGKLYHETHY APMLRMHGQA REIALDLVAA DGQRLPVLVT
AQVKNGSDGQ QQLIRLTVFD ARERRSYERE LVRARQEAER DREQHRRLTE ALRRTLLPPT
LPSLPGLEVA AHYRAANSDE VGGDFYDVYP LCGGDRLGFF VGDVSGRGPA AAELTSVARY
ALRGAAITES GPSAALGRLN EVLRGQRDGV PEFCTAVVGV LRPVDDGFAL ALASGGHPPA
LVVRADGAVE VLHTPGAQLV GLLAAPRFTR RTARLAVGDV LVLHTDGLGD DLLDGVRPGS
ARDVVDELAE RLAGSGGKDD AAVLAFGVGP A
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