| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_3849 |
|---|
| Symbol | |
|---|
| ID | 8328041 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Actinosynnema mirum DSM 43827 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013093 |
|---|
| Strand | + |
|---|
| Start bp | 4512815 |
|---|
| End bp | 4516069 |
|---|
| Gene Length | 3255 bp |
|---|
| Protein Length | 1084 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 644944336 |
|---|
| Product | alpha-1,2-mannosidase |
|---|
| Protein accession | YP_003101574 |
|---|
| Protein GI | 256377914 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3537] Putative alpha-1,2-mannosidase |
|---|
| TIGRFAM ID | [TIGR01180] alpha-1,2-mannosidase, putative |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.157867 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCACCCAC GAGGAGCACT GGTCACCGCG CTCGCGGCGG TCCTCACCGC CACGATGGCG
ACCCCGGTCG CCGCCCAGCC CGCACCCCTG GTCGTCCCCG ACCCCGCAGC CCACGTCGAC
CCGCTGATCG GCACCACCAA CCTGGGCAAC ACCTTCCCCG GCGCAGTGCT GCCGTTCGGC
ATGTTCTCCT TCAGCCCCGA GGGCACGCGC GGCAACACCC TGCGCGCCGC CGCGCCCGGC
GGCTACCGGC ACGACGCGAC CCGCCTGCGC GGCTTCAGCC TCACCCACAT GTCCGGCACC
GGCTGCGCGG GCGGCTCGGG GGACGTGCCG CTCTTCCCGC ACGTCGGCGA GGTCGCCACC
AGCCCGGCCT CGGACGCCAC CGACGCTCTC TACGCCAGCG ACTTCGCGCA CGCCGACGAG
ACCGCCAAGC CCGGCCGCTA CGACGTGCGG CTGAAGTCCG GCGCGCAGGT GGAGCTGACC
GCGACCACCC GCACCGGCGC GGGCCGCTTC ACCTTCCCGG CGGGCAAACC GGCCACGGTG
CTGGTGAACA CCGCCAAGTC GCAGGTGGGC AGCAGCGACG CGAGCACGAC CGTGGACGCG
GCCGAGCGCA CCGTGACCGG GTCGGTGACC AGCGGCAACT TCTGCGGCTA CCTCAACCAG
GCCGGGCGGC GCAGCTACTA CACCCTGCAC TTCGCCCTGG AGTTCGACCG CCCGTTCACC
AGCGTCGGCA CCTGGACCGA CGCGGCCGTG ACCCCCGGTT CGACCTCGGC GCGCGGCGGC
ACCACCTACG GCACGAACGG CTGGCCGGTG CTGGGCAAGG GCTCCGGCGC GTACCTGGGG
TTCGAGCCCG GCTCGACGGT CGGCGTGCGG GTGGGGATCT CGTACGTCAG CCAGGACGGC
GCGGTGCGCA ACCTGCGCGC GGAGAACACC GGCAGGCCGT TCGAGGACCT GCGCGACGAC
GCCTACCGCG CCTGGCAGGA CCAGCTGCGC AAGATCGAGG TGGGTGGCGG CTCGGACGCC
GACCGCACCA AGTTCTACAC CGCGCTGTAC CACTCCCTGC TGCACCCCAA CGTGTTCAGC
GACGTCGACG GCCGGTACGC GGGCTTCGAC GGCGAGGCGC GCGAGGTGTC CGGGCGGCAG
AGGGCCCAGT ACGCCACGTT CTCCGGCTGG GACGTCTACC GCTCGCAGGT CCAGCTCCTC
ACCCTGCTCG AACCCGATAT CGGCTCGGAC ATCGCGCAGT CGCTGCTCAA CCAGGCCGAG
CAGAACGGCG GCGTGTGGGA CCGCTGGACG CACGCCTCCG GCGGCACGCA CGTGATGAGC
GGCGACCCGT CCGCGCAGGC CCTCGCCGGA ATCCTCGCGT TCGGCGGCGA GAGGTTCGAC
GTGCGGGCCG CGACGAAGTC CCTCGTCAAG GCCGCCACCA CGCCCACCGC GCTGGACCTG
AGCAAGGAGG GCTGGGCGGT CATGTCGGTC GGGCAGCGGC CCTCGCTCGA CAAGTACCTG
CGGCTGGGCT ACATGCCGTC GGTGTCGAAC GCGTGGGGCG GGGCGGCCGA GACCCTGGAG
GTGTCGGGGG CGGACTTCGC GCTGAGCCAG CTCGCCGAGC GCACCGGCGA CCGGGCGACG
GCGCGGCGGT TCGCCGAGCG CGCCCAGTGG TGGCAGAACA ACTACGACCC GGTGGCGCAC
AGCACCGGCG GGTACGTCCG CAACCGCGAC GAGAGCGGCG AGTGGGCGCC CGGCTTCACC
CCGGACACCG GCACCGGGTT CGTGGAGGGC AGCAGCGCCC AGTACACCTG GATGGTGCCG
CACAACGTGG CCGGGCTGGT GGAGTCGCTG GGCGGCGCGG AGCGGGTCAA CCGGCGGCTG
GACGACTTCT TCCACGACGC GGACGGGAGC TGGGCGCTGT CCAAGCACGG CGGGGCGAAG
TCGGAGCTGG ACAACGAGCC GTCGCTGAAC GTGCCGTGGC TGTACAACTA CACCGGCCGG
CCCGCGAAGA CCCAGGAGAC CGTGCGGGAG GTCGTGAACA CGCTGTGGAC GACCGGTCCC
GGCGGGATTC CCGGCAACGA CGACCTGGGC GCGATGTCGT CGTGGTTCGT GTTCGCCGCG
CTCGGCCTGT ACCCGCAGGT GCCGTCGCGG GCGGAGCTGG TGCTGTCCGC GCCGCTGTTC
ACGTCGGTGG TGGTCCACCG GGACGGCGGG CGGGACATCA GGATCACCGC GCCGGGGGCG
TCGGCGCAGA CCAAGTACGT GCGGGCGTTG AAGGTCGACG GGCGGGCGAG CACCAGGACG
TGGGTGGACG ACTCGCTGGT GCGGCGCGGC GGGAAGCTGG ACTTCACCCT GTCCACGACG
CCGACCTCGT GGGGCACGGG GGCCGGTGAC GCGCCGCCGT CGTTCCGGCG GGGCGAGAAG
CCGATCCGGC ACGACCAGCC GTTCCACTTC GCGGTGGAGC CGGGCAGCCC GGTGGTGCAG
CCCGGCGGGA CGCTGGCGGT GACGATCGTC AAGACCCGGC TGTACGACGG CGATCCCAAG
GTGCGCTACG AGGTGTCCGG GCCGCCGGGA CTGGAGTTCG GGCCGGTGAC GGGGTCCGAT
CCGGCCGAGT TCACCGTGAC GGCCGCGCCG GACGCCGCAC AGGGCTTCCA CCCGGCTTCG
GTGACGGTGC TGGTGGCGGG CGCGGAGCCG GTGGAGCTGC CGCTGGTGGT GAAGGTCGCG
CCGGAGGACT CGATGCTGGC GGCCGTGGAC AACGCCGGGA TCTCCGACGA CGCGACCGGA
GCGGCGGACT TCGACGGCGG CGGGTACAGC TACTCGCGGC AGGCGCTCGC GGCGGCCGGG
TTGGTCGCGG GCGGGACGGG ATCGGTCGAC GGCCTGGCGT TCGCCTGGCC GGACTCCCCC
GCCGGGCTGC CGGACAACGC GGTGGCGGAC GGGCAGCGGA TCACCGCCGA GGGGACGCGG
CTGGCGTTCG TCGGGTCGGC GACGAACGGG CAGCGGGCCG AGGACGCGGT GGTCGAGTTC
ACCGACGGGT CCACCGCGAC GACGCAGCTC GGCTTCAGCG ACTGGACGCT CGGCGGCGGC
GGGTCGGCGC CCGCGTACGG GAACGTGGTG GTGGCGACGA CGCCGTACCG GAACCAGTCG
GGCGGCGGGA AGGAGTCGGT GGCGACGCAC ATCTTCGCGA CGCGGACGTA CACCGCGCCG
GAGGGGAAGC GGATCGCGGC GGTGGTGCTG CCGGTGGACG ACGGGCTGCA CGTGTTCGCG
GTGGCGACGG GCTGA
|
|---|
| Protein sequence | MHPRGALVTA LAAVLTATMA TPVAAQPAPL VVPDPAAHVD PLIGTTNLGN TFPGAVLPFG
MFSFSPEGTR GNTLRAAAPG GYRHDATRLR GFSLTHMSGT GCAGGSGDVP LFPHVGEVAT
SPASDATDAL YASDFAHADE TAKPGRYDVR LKSGAQVELT ATTRTGAGRF TFPAGKPATV
LVNTAKSQVG SSDASTTVDA AERTVTGSVT SGNFCGYLNQ AGRRSYYTLH FALEFDRPFT
SVGTWTDAAV TPGSTSARGG TTYGTNGWPV LGKGSGAYLG FEPGSTVGVR VGISYVSQDG
AVRNLRAENT GRPFEDLRDD AYRAWQDQLR KIEVGGGSDA DRTKFYTALY HSLLHPNVFS
DVDGRYAGFD GEAREVSGRQ RAQYATFSGW DVYRSQVQLL TLLEPDIGSD IAQSLLNQAE
QNGGVWDRWT HASGGTHVMS GDPSAQALAG ILAFGGERFD VRAATKSLVK AATTPTALDL
SKEGWAVMSV GQRPSLDKYL RLGYMPSVSN AWGGAAETLE VSGADFALSQ LAERTGDRAT
ARRFAERAQW WQNNYDPVAH STGGYVRNRD ESGEWAPGFT PDTGTGFVEG SSAQYTWMVP
HNVAGLVESL GGAERVNRRL DDFFHDADGS WALSKHGGAK SELDNEPSLN VPWLYNYTGR
PAKTQETVRE VVNTLWTTGP GGIPGNDDLG AMSSWFVFAA LGLYPQVPSR AELVLSAPLF
TSVVVHRDGG RDIRITAPGA SAQTKYVRAL KVDGRASTRT WVDDSLVRRG GKLDFTLSTT
PTSWGTGAGD APPSFRRGEK PIRHDQPFHF AVEPGSPVVQ PGGTLAVTIV KTRLYDGDPK
VRYEVSGPPG LEFGPVTGSD PAEFTVTAAP DAAQGFHPAS VTVLVAGAEP VELPLVVKVA
PEDSMLAAVD NAGISDDATG AADFDGGGYS YSRQALAAAG LVAGGTGSVD GLAFAWPDSP
AGLPDNAVAD GQRITAEGTR LAFVGSATNG QRAEDAVVEF TDGSTATTQL GFSDWTLGGG
GSAPAYGNVV VATTPYRNQS GGGKESVATH IFATRTYTAP EGKRIAAVVL PVDDGLHVFA
VATG
|
|---|
| |