Gene Amir_3817 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAmir_3817 
Symbol 
ID8328009 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameActinosynnema mirum DSM 43827 
KingdomBacteria 
Replicon accessionNC_013093 
Strand+ 
Start bp4476417 
End bp4477088 
Gene Length672 bp 
Protein Length223 aa 
Translation table11 
GC content76% 
IMG OID644944304 
Producttranscriptional regulator, TetR family 
Protein accessionYP_003101542 
Protein GI256377882 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.131002 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACCCCAC GCCCGAGCCG CCGGGAGCGC CCGGCCAAGC CGGCACTCAC CCGTGACGGC 
ATCATCGCCA CCGCCGTCGG CGTCCTGCGC GCCGAAGGGC TCGACAAGGT CACCATGCGC 
AGGCTCGCCG CCGAGCTGGA CACCGGCCCC GCCTCGCTCT ACGTCTACGT CCGCAACACC 
GGCGAGCTGC ACGCCGCCGT GCTCGACACC CTGCTCGGCG AGGTCGACCG CCCCGCTGCC 
ACCGGCCCCT GGCTCGACCG GCTCACCGGC CTGCTGTCCT CCTACACCCG CGTCCTGTTC 
GCGCACCCCG GCCTCGCCCG GTCCGCGCTG GTCAGCCGCC CGCACGGGCC GAACTACGTC 
GCGCTGGTCG ACGCGGTCCT CGGCCTGCTG CACGAGGGCG GCGTGCCCGT GGACCGGGCC 
GCTTGGGCGC TCGACGTGCT GCTGCAGCTG GCCACCGCCA CGGCGGCCGA GCACTCCGAG 
CCCGGCGCCG ACGACGCCGA GCAGTGGGCC GCGCTGTCCG AGGTCGTGCG CACCGCCGAC 
CCCACCACCC ACCCGCACAT CGCCCGAGCG GGCGACCACC TGCTCTCCGG CACCGGGCCC 
GACCGCCTCA CCTGGGCGTT CGCCGCGCTG GTCGCCGGAG CCGCGCACAC CCCCAGGGAG 
AGCACGCCAT GA
 
Protein sequence
MTPRPSRRER PAKPALTRDG IIATAVGVLR AEGLDKVTMR RLAAELDTGP ASLYVYVRNT 
GELHAAVLDT LLGEVDRPAA TGPWLDRLTG LLSSYTRVLF AHPGLARSAL VSRPHGPNYV 
ALVDAVLGLL HEGGVPVDRA AWALDVLLQL ATATAAEHSE PGADDAEQWA ALSEVVRTAD 
PTTHPHIARA GDHLLSGTGP DRLTWAFAAL VAGAAHTPRE STP