| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_3800 |
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| Symbol | |
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| ID | 8327992 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Actinosynnema mirum DSM 43827 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013093 |
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| Strand | + |
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| Start bp | 4460082 |
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| End bp | 4461833 |
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| Gene Length | 1752 bp |
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| Protein Length | 583 aa |
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| Translation table | 11 |
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| GC content | 77% |
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| IMG OID | 644944288 |
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| Product | Transketolase central region |
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| Protein accession | YP_003101526 |
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| Protein GI | 256377866 |
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| COG category | [H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism |
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| COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
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| TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.377539 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCCGACA CCACGACCAG GCCGCCCCAA CCGGCGCCGG GCGGCTCCTT CGACCTGCGC
GCCCTCCCGC CCGACGAGCT GCCGGGCCTC GCGCACCGCC TGCGGGCGCT GCTGGTGCAC
TCGGTCAGCC GCACCGGCGG TCACCTCGGC CCGAACCTGG GCGTGGTGGA GCTGACGCTC
GCGCTGCACC GGGTCTTCCG CTCCCCCACC GACCGCCTGG TGTTCGACAC CGGCCACCAG
ACCTACGTGC ACAAGATGCT CACCGGCCGC GCCGACCTGT TCGGCGGGCT GCGCCGCGCG
GGCGGGCTGT CCGGGTACCC GAGCCGCGCC GAGTCGCCGC ACGACCTGGT CGAGAACTCG
CACACCTCCA CCGCCCTGTC CTACGCGGAC GGGCTGGCCC GCGCGGCCCG CTCGCGCGGG
GAGGAGCGGC ACGTGGTGGC CGTGGTCGGG GACGGGGCGC TGACCGGCGG CATGGCGTGG
GAGGCGCTCA ACAGCATCGC CGTGAGCGAC CTGCCGGTCG TGGTGGTGCT CAACGACAAC
GGCCGCTCGC ACGGGCCGAC GGCGGGCGCG GTCGGGCGGC ACCTGGCGGC GCTGCGCCGG
GGCACGGCGG TGTCGTCGGT GTTCGCGGAC CTGGGCGTGC GCTACCTGGG GCCGGTCGAC
GGCCACGACA TCGCCGAGCT GGAGGCCGCG CTCACCTCGG CCCGCGAGTA CCGGGGCCCG
GTGGTGGTGC ACTGCCTGAC CCGGAAGGGC TTCGGGCACG CCCCCGCCGA GCAGGACGAG
TCCGACCACA TGCACGCGAT CGCCCCGCCG TCGATGCCGG GCGGTCCGGA GTGGACGGCC
GTGCTCGGCG AGCACCTGGT GGCGCTGGGC GAGACCCGCC CGGACCTGTT CTGCCTGACC
GCGGCGATGG TGGAGCAGAC GGGCCTGGGC CCGTTCGCCC GCCGCTTCCC CGACCGGGTG
CTCGACACCG GCATCGCCGA GCAGCACGCG GTGACCTGCG CGGCAGGGCT GGCGATGGGC
GGGCTGCGGC CGGTGGTGGC GCTGTCGTCG ACGTTCCTGC CGCGCGCGCT CGACCAGGTG
CTGATGGACG TGGCGCTGCA CCGGCTGCCG GTGGCGCTGG TGCTGGGCCG GGCCGGGATC
ACCGGCGAGG ACGGGCCGAG CCAGCACGGC GCGTGGGACC TGGCGCTGCT GCGCGGCGTG
CCGGGGCTGC GGGTGGCCGC GCCGCGCGAC GCGACCCGGT TGCGGGAGCT GCTGGAGCAG
GCCGTCGACC GGGACGGGCC GACCGCGCTG CGCTTCCCGC AGGGGCCGGT GGGGGTGGAC
CTGGACGCGG TGTCGCGGGT GGGCGGGGTG GAGGTGCTGC ACAGCGCCTC GCGGCGGGAC
GCGCTGCTGG TGACCGTGGG GAGCCTGGCC GCGCAGGGCG TGGCGGCGGC GGTCGGGCTG
GGCGGGCAGG GCATCGGGGT GACGGTGTGC GATCCGGGGT GGGTGCTGCC GGTGGACCCG
TCGCTGATCG CGCTGGCCGC CGAGCACCGG GTGGTGGTGT GCGCGGAGGA CGGGGTGCGC
GCGGGCGGGG TCGGGGATGC GGTCGCGGCG GCGCTGCGCG AGGCGGGGCT GAGCCGCCGG
GTGCGGGTGC TCGGGCTGCC GTCGGAGTTC CTGGCGCACG GGTCCCGGTC GGACATCCTG
CGGCTGCACG GCCTGGACGC GGCGGGCATC GCCGAGGGCG TGGAGCGCTT CCTGGACAGG
AGCGCGGCAT GA
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| Protein sequence | MSDTTTRPPQ PAPGGSFDLR ALPPDELPGL AHRLRALLVH SVSRTGGHLG PNLGVVELTL
ALHRVFRSPT DRLVFDTGHQ TYVHKMLTGR ADLFGGLRRA GGLSGYPSRA ESPHDLVENS
HTSTALSYAD GLARAARSRG EERHVVAVVG DGALTGGMAW EALNSIAVSD LPVVVVLNDN
GRSHGPTAGA VGRHLAALRR GTAVSSVFAD LGVRYLGPVD GHDIAELEAA LTSAREYRGP
VVVHCLTRKG FGHAPAEQDE SDHMHAIAPP SMPGGPEWTA VLGEHLVALG ETRPDLFCLT
AAMVEQTGLG PFARRFPDRV LDTGIAEQHA VTCAAGLAMG GLRPVVALSS TFLPRALDQV
LMDVALHRLP VALVLGRAGI TGEDGPSQHG AWDLALLRGV PGLRVAAPRD ATRLRELLEQ
AVDRDGPTAL RFPQGPVGVD LDAVSRVGGV EVLHSASRRD ALLVTVGSLA AQGVAAAVGL
GGQGIGVTVC DPGWVLPVDP SLIALAAEHR VVVCAEDGVR AGGVGDAVAA ALREAGLSRR
VRVLGLPSEF LAHGSRSDIL RLHGLDAAGI AEGVERFLDR SAA
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