| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_3736 |
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| Symbol | |
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| ID | 8327926 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Actinosynnema mirum DSM 43827 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013093 |
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| Strand | + |
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| Start bp | 4389753 |
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| End bp | 4392806 |
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| Gene Length | 3054 bp |
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| Protein Length | 1017 aa |
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| Translation table | 11 |
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| GC content | 77% |
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| IMG OID | 644944225 |
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| Product | putative PAS/PAC sensor protein |
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| Protein accession | YP_003101465 |
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| Protein GI | 256377805 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG2208] Serine phosphatase RsbU, regulator of sigma subunit |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00377] anti-anti-sigma factor |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGGCCCACC TGGGGGTCGA CCGGACGCTC CTGTCACTGG CGCCCGAAGG CCGCACCCTG
CTCGGCCTCT CCGCAGGTGA GGACCTCGGG GCACTCCCGG AGAGCCTGCG GGAGGCCGTC
GACGGCGCGG CCGAGGAGGG GGCGTGGACC GGTGTCGGCG AGCTGGCGGG CGTCCCGGTC
CGGGTGGTCT GCGTCGCCCT CGGCGAGGGG TACGCGCTGG TGGCGACCCC TCTCGCGGCG
GGTGTCGACG CCAGTGGCGA CACACCTACC GCCGACGTGA GAATTCACAC AACGCCTGAC
ACAAATTTCG ACCCCTTCGA GGCGCGGGGA GAGGTCCCCG GCGAGCACCT GCGCGGGCTC
GTGGACGCCC TCTCGGTGGT CGTCTGGGCC GCCGACGCGA CCACCGGGCG CTACACCTTC
GTGTCACGGC ACGCCGAGCG GCTGCTCGGC TACCCGGTGG AGCGCTGGTT GGGCGAGCCC
GCCTTCTGGG AGTCCGTCGT GCACCCCGAG GACCGGGCCG CGATCGCCGA CCGCGACGTG
GAGGGGCTCT CGGACTACGA GCTGGACTAC CGCGCCGTCG CCGCCGACGG GCGCGTGGTG
TGGCTGCACG ACCTGGTCAG GGTGGCCCGC GACGAGCGCG GCGAGCCGAC CGCGCTGCAC
GGCGTGCTCG TGGACACCTC CCCCGGCCGG GCCGCCGAGG CGCGCCGCCG GTTCCTGGCC
GGGCTGGAGG AGCGGCTGCA GCGCCTGGAG GACGCGGGCG AGGTGATGAC CGCCGCGACC
AGGCTGCTCG GCGAGCACCT GGGCGCCGAC CGGTGCGCGT ACGCCGAGTC CGAGTCCGAC
CAGGACCACT TCACGATGAG CGGCGACCAC GCCACCGGGC TGCCGCCGCT GACCGGCCGG
TTCGCCATGT CCTCGTTCGG GCGGGACGCG CTGCTGGCGA TGCGGGCGGG CGAGCCGTGG
GTGGTGCGCG ACAGCGAGGA CGACCCGAGG CTGACCGCCG AGGACCGCGC CGTCTACCGG
CGCACCGGCA TCCGCGCGGT GATCTGCCTG CCGCTGCTGC GCGGCGGCCG GTTCGCCGCC
GCGCTGGCCG TGCACCAGGC CGTGCCGAGG CGGTGGACGG CCGCCGAGGT GGAGCTGGTG
TCGGTGGCGG CCAACCGGTG CTGGGAGTCG GTGCAGCGCA CGCACGCCGA CCGGGCGCTG
AGGGAGAGCG AGCTGCGGTT CCGGCAGCTG GTGGAGCGGG CCACCGACGG GATCTGGGTG
GTGGACCGGG ACCTGCGGTT CGTGGAGGTC AACCCGGCGG CGTGCGCGCT GCTCGGGCAC
GCCCGCGAGG ACCTGCTGGG CAAGCCGGTG GCGGCGCTGC TCGGGTCCGA GCGCGGGGAG
CGGCTGGCCG CGCTGCTGGG CGACGAGGGC GAGCCGGACG TGGTGACCGA GGTGTGGCAG
GTGCGGCGCG CCGACGGCGG CGCGGTCGCG CTGGAGCTGA GCATCCAGGC CACGCCGACC
GGGTTGCAGG CCATCGGGCG GGACATCACC GAGCGGCAGC GGGCCGAGGC GGAGCGGGAG
GCGCTGCGGC ACCGGGAGCA CGAGATCGCG GAGGCGCTGC AGCGGAGCCT GCTGCCGCGC
GAGCTGCCCG CGCTGCCCCG CCTGGCCGCC GCGGCCCGCT ACCTGCCCGC CTCGGCGCAC
ACCCAGATCG GCGGCGACTG GTACGAGGTG CTGCCGGTCG GGGAGACGAC CGTGGCGCTG
TCGGTCGGCG ACGTGGTCGG GAAGGGCCCG CAGGCCGCCG CCGTGATGGG GCAGCTGCGC
AGCGCGCTGG CCGGGTACCT GCTGGACGGG CACTCGCCCG CGGCGGCGCT GGAGCGGCTG
GACGCGTTCG CGCTGCGCAC GCGCGGGGCC CCCGGCAGCA CCTGCGCCTG CCTGACGCTG
GACTGGAGCA CCGGGGAGCT GAGCTGGGCG AGCGCCGGGC ACCCGCCGCC GCTGCTGGTG
GAGCCCGAGC GGTCGCGGTT CCTGCCCATC GGGACCGGGA CGGTGCTGGG GGTGCCCGGC
CGCGCGGCCT ACCGGGACTC GCAGGTGGTG CTGCCCGCCG GGGGCACCGT GGTGCTGTAC
ACGGACGGGC TGGTGGAGCG GCGCGGGGCG CTGATCGACG CCGGGCTGGA CGCGCTGCTG
CGGCTGGTGC GGGGCGAGCA CGAGCTGGGG CCGGACGAGC TGGCCGACCG GATCACGTCC
GCGCTGCTCG ACGGCGGGCA GGACGACGAC GTGGCGCTGG TGGTGGTGCG GAAGATCCCG
GAACCGCTGC GGCGGCGGGT CGCGGCCGAG GCCCCCGAGC TGTCGGGGAT GCGGCGGCGG
GTCGCGGAGT GGGCGGGGCG GGCCGGGCTG TCCGACGACC TGCTGTGCGA CCTGCAGCTG
GCGCTGGGCG AGGCGGCGGC GAACGCGGTC GACCACGCCT ACCCGGACGG GCCCGGCGAG
TTCGAGTACG CGGTCGAGCG GGTCGGGGAC GGCGGGGTCA GGGTCCGGGT GCGCGACTGG
GGGCGGTGGC GGCCCGAGCC CGAGGACAAG GGGCACCGGG GGCGCGGGGT GCAGCTGATC
CGGTCCGTGG GGCGCGACGC GGTGTTCGCC AGGGGGCCGG AGGGGACCGC GGTCGAGTTC
GTGGTCCCCG AGGGCGACGG TCCCGGCGTT CCCGCGCCCC GGCGGCGGGT GCGCGGGCCG
GTCGTGGGGG TCCGCTGCAC GGCCGGTGAG GAGTTCCGGG ACGCGGTGCA GGTGCTGCAC
CTGGGCGGTG ACCTGGACCT GGACGGGGTC AGGGCGCTGC GGGAGTTCCT GCTCGGCCGG
GTGGACGTGG CCGACCGGCG GCCCGTCGAG CTGGACCTGA GCGGGCTGGG GTACCTGAGC
AGCTCCGGGG TGGCGCTGCT GCTGGAGGCC GCCGAGGTCG CCGCCGGGCG CGGTCGCGGG
GTGGGCGTCG TGGTCACCGA GGGGAGCGCG CCCGCCCGCA TCATGGCGGT GTCCGGGTTG
CACGGGGGCG CGGCCGGGGA CCGGCTCTCG CTCCGGGTGG TGCCGCCTCG GTAG
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| Protein sequence | MAHLGVDRTL LSLAPEGRTL LGLSAGEDLG ALPESLREAV DGAAEEGAWT GVGELAGVPV
RVVCVALGEG YALVATPLAA GVDASGDTPT ADVRIHTTPD TNFDPFEARG EVPGEHLRGL
VDALSVVVWA ADATTGRYTF VSRHAERLLG YPVERWLGEP AFWESVVHPE DRAAIADRDV
EGLSDYELDY RAVAADGRVV WLHDLVRVAR DERGEPTALH GVLVDTSPGR AAEARRRFLA
GLEERLQRLE DAGEVMTAAT RLLGEHLGAD RCAYAESESD QDHFTMSGDH ATGLPPLTGR
FAMSSFGRDA LLAMRAGEPW VVRDSEDDPR LTAEDRAVYR RTGIRAVICL PLLRGGRFAA
ALAVHQAVPR RWTAAEVELV SVAANRCWES VQRTHADRAL RESELRFRQL VERATDGIWV
VDRDLRFVEV NPAACALLGH AREDLLGKPV AALLGSERGE RLAALLGDEG EPDVVTEVWQ
VRRADGGAVA LELSIQATPT GLQAIGRDIT ERQRAEAERE ALRHREHEIA EALQRSLLPR
ELPALPRLAA AARYLPASAH TQIGGDWYEV LPVGETTVAL SVGDVVGKGP QAAAVMGQLR
SALAGYLLDG HSPAAALERL DAFALRTRGA PGSTCACLTL DWSTGELSWA SAGHPPPLLV
EPERSRFLPI GTGTVLGVPG RAAYRDSQVV LPAGGTVVLY TDGLVERRGA LIDAGLDALL
RLVRGEHELG PDELADRITS ALLDGGQDDD VALVVVRKIP EPLRRRVAAE APELSGMRRR
VAEWAGRAGL SDDLLCDLQL ALGEAAANAV DHAYPDGPGE FEYAVERVGD GGVRVRVRDW
GRWRPEPEDK GHRGRGVQLI RSVGRDAVFA RGPEGTAVEF VVPEGDGPGV PAPRRRVRGP
VVGVRCTAGE EFRDAVQVLH LGGDLDLDGV RALREFLLGR VDVADRRPVE LDLSGLGYLS
SSGVALLLEA AEVAAGRGRG VGVVVTEGSA PARIMAVSGL HGGAAGDRLS LRVVPPR
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