| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_3724 |
|---|
| Symbol | |
|---|
| ID | 8327914 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Actinosynnema mirum DSM 43827 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013093 |
|---|
| Strand | + |
|---|
| Start bp | 4373506 |
|---|
| End bp | 4375314 |
|---|
| Gene Length | 1809 bp |
|---|
| Protein Length | 602 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 644944213 |
|---|
| Product | cytochrome c oxidase, subunit I |
|---|
| Protein accession | YP_003101453 |
|---|
| Protein GI | 256377793 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0843] Heme/copper-type cytochrome/quinol oxidases, subunit 1 |
|---|
| TIGRFAM ID | [TIGR02891] cytochrome c oxidase, subunit I |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.189938 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGACTGCGC TGTCCCCGAC ACCCGTCGAC GTCCACCAGA GCCCCCCGAC ACGGGGTTCG
AAGGGGGCGG CGCTGCTGCG GCTGTTCCAC ACCACCGACC ACAAGCAGAT CGGCGTGATG
TACCTCGTCA CGACGTTCTT CTTCTTCATG GTCGGCGGTG CGATGGCAAT GCTCATCCGC
AGCGAGCTGG CCGTTCCCGG ACTGCAGTTC CTGTCCAACG AGCAGTACAA CCAGATGTTC
ACCATGCACG GCACGGTGAT GCTGCTGCTG TACGCCACCC CGAGCGTCTT CGCGTTCGCC
AACTTCATCC TGCCGCTCCA GATCGGCGCG CCGGACGTCG CGTTCCCGCG GCTGAACGCG
TTCTCGTACT GGCTGTTCCT CTTCGGCGGC CTGCTGATGC TCGGCGGGTT CCTGACGCCC
GGCGGCGCGG CGGACTTCGG CTGGTTCGCG TACACCCCGC TGTCGCTGGC GAACTACTCG
CCGGGCTCGG GCGCGAACAT GTGGATCGTC GGCCTCGCGG TCGGCGGTCT GGGCACCATC
CTCGGCGCGG TCAACATGAT CACCACGATC GTGTGCCTGC GGGCCCCCGG CATGACCATG
TGGCGGATGC CGATCTTCAC CTGGAACATC CTCGTGACCA GCGTGCTGAT CCTGGTGGTG
TTCCCGATCC TGACGGCGGC GGGCTTCGGC CTGCTCGCGG ACCGGCTGAT CGGCGCGCAC
GTGTTCGACC CCGCCAACGG CGGCGTCGTG CTGTGGCAGC ACATGTTCTG GTTCTTCGGC
CACCCCGAGG TGTACATCCT GGCGCTGCCG TTCTTCGGCG TCGTGTCGGA GATCATCCCG
GTGTTCTCCC GCAAGCCGAT CTTCGGCTAC CGCGGTCTGG TGTGGGCGAC CATGTCGATC
GCGGCGCTGT CGATCGCGGT GTGGGCGCAC CACATGTACG CCACGGGCGC CGTGCTGCTG
CCGTTCTTCG CGTTCATGAC CTTCCTGGTC GCGGTGCCGA CCGGGGTCAA GTTCTTCAAC
TGGATCGGCA CCATGTGGAA GGGGACGATG ACCTTCGAGT CCCCGATGCT GTTCTGCGTC
GGGTTCCTGG TCACGTTCCT GTTCGGCGGT CTGTCCGGCG TGCTGCTGGC CTCCCCGCCG
CTCGACTTCC ACGTCTCCGA CACCTACTTC GTGGTCGCCC ACTTCCACTA CGTGCTCTAC
GGGACCATCG TGTTCGCGAC CTTCGCGGGC ATCTACTTCT GGTTCCCCAA GATCACCGGT
CGGATGCTGG ACGAGGGGCT GGCGCGCTGG CACTTCTGGA CCACGATGAT CGGCTTCCAC
GCCACGTTCC TGGTGCAGCA CTGGCTGGGC AACGAGGGGA TGCCGCGCCG GTACGCGGAC
TACCTGGCCG CGGACGGGTT CACCACGCTC AACATCGTCT CCACGATCGG CTCGTACGTG
CTCGGCGCCT CGACGCTGCC GTTCCTGTGG AACGTCTTCA AGAGCTACCG CTACGGCGAG
CGCGTGACCG TGGACGACCC GTGGGGCTAC GGCAACTCGC TGGAGTGGGC GACCTCCTGC
CCGCCGCCCA GGCACAACTT CACCGAGCTG CCCCGGATCC GCAGCGAGCG ACCGGCCTTC
GAGCTGCACT ACCCGCACAT GGTGGAGCGG ATGCGCAACG AGGCCCACGT GAGCTTCACC
GGGCGCAGCA AGCACGTGGA GACCGAACTG GAGCCCGCCG CGATCTCCGC GGATCGCGGC
GAGGGCGCCG ACGGGGACGG CAAGCCGTCC CCGAGGACGG ACGACAAGGG CAAGCCGCTG
TCCGACTAG
|
|---|
| Protein sequence | MTALSPTPVD VHQSPPTRGS KGAALLRLFH TTDHKQIGVM YLVTTFFFFM VGGAMAMLIR
SELAVPGLQF LSNEQYNQMF TMHGTVMLLL YATPSVFAFA NFILPLQIGA PDVAFPRLNA
FSYWLFLFGG LLMLGGFLTP GGAADFGWFA YTPLSLANYS PGSGANMWIV GLAVGGLGTI
LGAVNMITTI VCLRAPGMTM WRMPIFTWNI LVTSVLILVV FPILTAAGFG LLADRLIGAH
VFDPANGGVV LWQHMFWFFG HPEVYILALP FFGVVSEIIP VFSRKPIFGY RGLVWATMSI
AALSIAVWAH HMYATGAVLL PFFAFMTFLV AVPTGVKFFN WIGTMWKGTM TFESPMLFCV
GFLVTFLFGG LSGVLLASPP LDFHVSDTYF VVAHFHYVLY GTIVFATFAG IYFWFPKITG
RMLDEGLARW HFWTTMIGFH ATFLVQHWLG NEGMPRRYAD YLAADGFTTL NIVSTIGSYV
LGASTLPFLW NVFKSYRYGE RVTVDDPWGY GNSLEWATSC PPPRHNFTEL PRIRSERPAF
ELHYPHMVER MRNEAHVSFT GRSKHVETEL EPAAISADRG EGADGDGKPS PRTDDKGKPL
SD
|
|---|
| |