| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_3547 |
|---|
| Symbol | |
|---|
| ID | 8327737 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Actinosynnema mirum DSM 43827 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013093 |
|---|
| Strand | + |
|---|
| Start bp | 4120859 |
|---|
| End bp | 4122058 |
|---|
| Gene Length | 1200 bp |
|---|
| Protein Length | 399 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 75% |
|---|
| IMG OID | 644944044 |
|---|
| Product | major facilitator superfamily MFS_1 |
|---|
| Protein accession | YP_003101284 |
|---|
| Protein GI | 256377624 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0153034 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGGTCA CCGCGCCCGC GCAGACCACG CCCGCCCGAG GGTCCGGAGC CGCGATGACC
GCGCTCGCCC TCGGCGGTTT CGGCATCGGC ACCACCGAGT TCGCGACGAT GGGCCTGCTC
CCCCAGGTCG CCGAGACGTT CGGCATCTCC ATCCCCGCCG CCGGGTACGC GATCACGCTG
TACGCGCTCG GCGTGGTCGT GGGCGCCCCG CTGATCGCCG GGCTGGCCGC GCGGCTGCCG
CGCAAGGGGC TGCTGATCGC GCTGACCGTG GCGCTGGCGG TCGGCAACGG GCTGTCCGCC
GTCGCGTGGG ACACCGGGTC GCTGCTGGCC GCCAGGTTCA TCGCCGGGCT GCCGCACGGG
GCGTACTTCG GCATCTCCGC CGTCGTCGCC GCCGCGCTCG TGCCCGCGCA CCGGCGCGGC
ACCGCCGTGG CGCGCGTGAT GGTCGGGCTG ACCGTGGCGA ACCTGGTGGG CGTGCCCGCC
GCGACGGCCG CCGGGCAGCA GATCGGGTGG CGCTCGGCCT ACCTGGCGGT GGCGGCGATC
GAGGTCGTGA CGGCGCTCGC GCTGGCCCGC TCCCTGCCCA GGGTGGCCGC GCCGCGCGAC
GCGAGCGTGG CGGCGGAGCT GCGCGCGTTC CGGCGGCTGC CGGTGTGGCT GGCGCTGGCC
ACCGGCATGG TCGGGTTCGG CGGGATGTTC GCGGTGTACT CGTACATCTC GCCCATCACG
ACCGAGGTGA CCGGGCTGGC CGAGTCGGCG GTGCCGTGGG TGCTGGCCGT GTTCGGCCTG
GGCATGACGA TCGGCGCGAC GTTCGGCGGG CGGTTCATCG ACCGGTCGGT GGCGGGCAGC
GTGCTCGGGT CGATGGCGGT GATGGTGGTG GTGCTGGTGC TGTTCGGGCT GCTGGCGTCC
TCGCCGGTGG CGGCGATCGC GCTGGTGTTC CTGATCGGGT TCGTCTCGCA GGTGCTGGCG
TCCGCGCTCC AGGTGCGGCT GATGGACGCC TCACCGGACG CGCCGTCGCT GGCGGCGTCG
TCGAACCACT CGGCGCTGAA CGTGGCCAAC GGGGCCGGGG CGTGGCTGGG CGGTCTGGCG
ATCGCGGCCG GGTGGGGGCT GGTGTCCACC GCCTGGGTGG GGGTGGCGCT GAGCGTGGCC
GGGCTGGCGG TGGTCGGGGT GTCGGCGCTC GTGGAGCGAC GGGAGCAGGC TTCGGCGTAG
|
|---|
| Protein sequence | MTVTAPAQTT PARGSGAAMT ALALGGFGIG TTEFATMGLL PQVAETFGIS IPAAGYAITL
YALGVVVGAP LIAGLAARLP RKGLLIALTV ALAVGNGLSA VAWDTGSLLA ARFIAGLPHG
AYFGISAVVA AALVPAHRRG TAVARVMVGL TVANLVGVPA ATAAGQQIGW RSAYLAVAAI
EVVTALALAR SLPRVAAPRD ASVAAELRAF RRLPVWLALA TGMVGFGGMF AVYSYISPIT
TEVTGLAESA VPWVLAVFGL GMTIGATFGG RFIDRSVAGS VLGSMAVMVV VLVLFGLLAS
SPVAAIALVF LIGFVSQVLA SALQVRLMDA SPDAPSLAAS SNHSALNVAN GAGAWLGGLA
IAAGWGLVST AWVGVALSVA GLAVVGVSAL VERREQASA
|
|---|
| |