Gene Amir_3216 details

Gene Information

• Locus tag: Amir_3216
• ID: 8327406
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Actinosynnema mirum DSM 43827
• Kingdom: Bacteria
• Replicon accession: NC_013093
• Strand: +
• Start bp: 3748226
• End bp: 3750175
• Gene Length: 1950 bp
• Protein Length: 649 aa
• Translation table: 11
• GC content: 72%
• IMG OID: 644943730
• Product: glycoside hydrolase family 5
• Protein accession: YP_003100970
• Protein GI: 256377310
• COG category: [G] Carbohydrate transport and metabolism
• COG ID: [COG2730] Endoglucanase

Plasmid Coverage information

• Num covering plasmid clones: 19
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGCTGTCAC CCACCCACGG GCGCGGACGG CGGTGGCTGG CCGCGCTCGC GGCCGTCCCG 
CTGGTCGCCG CCACCCTCGC GGCCTCCGCG CTCGCCCCGC CCGCCGCCTC CGCCGCACCG 
CCCGCCAAGG ACTGGCTGCA CGTCCAGGGC AACCGGATCG TCGACGCGGC GGGCAACCGC 
GTCCAGCTCA CCGGAGCCAA CTGGTTCGGC TTCAACGCCA CCGAGCGCGT CTTCCACGGC 
CTGTGGTCGG CCAACATCAC CGAGATCACC AAGGCGATGG CCGATCGTGG CGTCAACCTG 
GTGCGCGTGC CCGTGTCCAC CCAGCTGCTG CAGGAGTGGA AGGAGGGCAG GACCGTCGCC 
AAGCCGAACA TCAACGACTA CGCGAACCCC GAGCTGGCGG GGATGAACAA CCTCCAGATC 
TTCGACTTCT GGCTGCGGCT GTGCGAGCGG TTCGGGCTCA AGGTGCTGCT GGACGTGCAC 
AGCGCCGAGG CCGACAACTC CGGCCACGTG CACCCCGTCT GGTACAAGGG CTCGGTCACG 
CCGGAGGTGT TCTACTCCAC CTGGGAGTGG GTCACCGCGC GGTACGAGGA CAACGACACG 
ATCATCGCCG TCGACGTCAA GAACGAGCCC CACGGCGGTC CCGGCGACTC GCCGCGCGCC 
AAGTGGGACG GCTCGACCGA CGTCGACAAC TGGAAGCACA CCTGCGAGAC CGCGGGCCGC 
CGCATCCTCG CGATCAACCC CGAACTGCTG GTGCTGTGCG AGGGCAACGA GGTCTACCCG 
CGCCCCGGCA AGGGCTGGGA CGCGCCGGAC ACCAACCCCG ACCGCACGCC CAACTACTTC 
CACACCTGGT GGGGCGGCAA CCTGCGCGGC GTCGCCGAGC ACCCGGTGAA CCTGGGCGCG 
AACCAGGACC AGCTCGTCTA CTCCCCGCAC GACTACGGCC CCCTGGTGTT CAACCAGCCG 
TGGTTCGACA AGCCGTTCAC CAAGGAGTCG CTGATCACCG ACGTGTGGCG GCCCAACTGG 
CTGTACCTGC ACGAGCAGGG CGCCGCGCCG CTGCTGATCG GCGAGTGGGG CGGGCGGCTC 
GGCGAGGACG AGCGGCAGGA CCGGTGGATG GCCGCGCTGC GCGACCTGAT CGTGGAGGAG 
GGGCTGCACC AGACGTTCTG GGCGCTCAAC CCGAACTCCG GCGACACCGG CGGGCTGCTG 
CTCGACGACT GGAAGACCTG GGACGCGGCC AAGTACGCGC TGCTCAAGCC CGCGCTGTGG 
CAGCACGCAG GCAAGTTCGT GAGCCTGGAC CACCAGGTGC CGCTCGGCGG CGAGGGCTCC 
ACCACCGGCA TCAGCCTCGC CCAGCGCTAC GGCGACGGCG GCGGCCCCGG CGACACCGCG 
GCCCCGACCG CGCCGACCGG GCTGGCGATC GGCACGACCA CCGCCTCGTC GGTCGCGCTG 
AGCTGGCAGG CCGCGACCGA CGACGTCGGC GTCACCGGGT ACGACGTGTA CCGGGGCGGC 
GCGAAGGTCG GCACGAGCGC CACGACCTCC TACGTGGACA CCGGGCTCAG CGGCGGCACC 
ACCTACAGCT ACTCGGTGCG GGCCAGGGAC GCGGCGGGCA ACACCTCGGC GGCCTCGGCC 
TCCCGCAGCG CGACGACCCC GCCGGGCGGT GGTGGCGGTG ACGCCGGGTG CGCGGCGGTG 
CTGCGCGTGG TCAACAGCTG GCAGGGCGGC TACCAGGGGG AGGTCACCGT GACCAACTCC 
GGGACGGCGG CCACGCGGGG CTGGAAGGTC GCGCTGACGA CCGCGTCCGG CACCACGATC 
TCCAGCGTGT GGAACGGGAC CTACGCCTCG GGGACGGTCG TGAACGCCGC GCACAACGGC 
GCGCTGGCCC CGGCGGGCAG CACCACGTTC GGGCTGACCG GGACGGGGCA GGCGACCGGG 
GTGACGATCA CCGGCTGCAC GGCTTCCTGA 

 

Protein sequence

MLSPTHGRGR RWLAALAAVP LVAATLAASA LAPPAASAAP PAKDWLHVQG NRIVDAAGNR 
VQLTGANWFG FNATERVFHG LWSANITEIT KAMADRGVNL VRVPVSTQLL QEWKEGRTVA 
KPNINDYANP ELAGMNNLQI FDFWLRLCER FGLKVLLDVH SAEADNSGHV HPVWYKGSVT 
PEVFYSTWEW VTARYEDNDT IIAVDVKNEP HGGPGDSPRA KWDGSTDVDN WKHTCETAGR 
RILAINPELL VLCEGNEVYP RPGKGWDAPD TNPDRTPNYF HTWWGGNLRG VAEHPVNLGA 
NQDQLVYSPH DYGPLVFNQP WFDKPFTKES LITDVWRPNW LYLHEQGAAP LLIGEWGGRL 
GEDERQDRWM AALRDLIVEE GLHQTFWALN PNSGDTGGLL LDDWKTWDAA KYALLKPALW 
QHAGKFVSLD HQVPLGGEGS TTGISLAQRY GDGGGPGDTA APTAPTGLAI GTTTASSVAL 
SWQAATDDVG VTGYDVYRGG AKVGTSATTS YVDTGLSGGT TYSYSVRARD AAGNTSAASA 
SRSATTPPGG GGGDAGCAAV LRVVNSWQGG YQGEVTVTNS GTAATRGWKV ALTTASGTTI 
SSVWNGTYAS GTVVNAAHNG ALAPAGSTTF GLTGTGQATG VTITGCTAS