| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_3108 |
|---|
| Symbol | |
|---|
| ID | 8327298 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Actinosynnema mirum DSM 43827 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013093 |
|---|
| Strand | + |
|---|
| Start bp | 3590424 |
|---|
| End bp | 3591530 |
|---|
| Gene Length | 1107 bp |
|---|
| Protein Length | 368 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 644943628 |
|---|
| Product | Ricin B lectin |
|---|
| Protein accession | YP_003100868 |
|---|
| Protein GI | 256377208 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.448739 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGACTGC CCCTCCGACG ACTGGCCGCC TGCGCCGCGG CCCTGCTCGC CGCCGCGCTG
CTGCCCGCCG CCCCGGCCTC CGCCGAGTCC AACGGCGGGA CGCGGGTCAT GCCGCTGGGC
GACTCCATCA CCGAGGGCAC CCAGGTCCCC GGCGGCTACC GGATCGGCCT GTGGCAGCGG
TTCGTCTCCG GTGGGCACCG GGTCGACTTC GTCGGCTCCC AGTTCAACGG GCCCGCCTCG
CTCGGGGACC ACGACCACCA GGGGCACCCC GGCTGGCGCA TCGACCAGAT CGACGCCAAC
GTCGCCACCT GGCTGCGCAA CACCACCCCG CGCTCCGTGC TGCTGCACAT CGGCACCAAC
GACGTCCTGC AGAACTGGAA CGTGGCCAGC GCGCCCTCCC GCCTGTCGGC GCTGATCGAC
CGCATCACGT CGACCGCGCC GAACGCCGAC GTGCTCGTCG CGACGATCAT CCCGATCGCC
AACGCGGGCC AGGACGCCGC CGCGCGGACC TTCAACGCCG CCATCCCCGG CATCGTGCGG
AGCAAGGCCG ACGCGGGCAA GCGCGTGCAC CTGGTCGACA TGCGCTCCGC GCTCACGACC
GCCGACCTGG TCGACGGCGT CCACCCCACG GCGGGCGGCT ACGACAAGAT GGCCGCGACC
TGGCACAACG CGCTGCGCGC CATCCCCGGC AGCATCGGCG AGCCCGGCGG CTCGCCGGGT
GGGCGGCTGG TCAACACCGC CTCGGGCCGC TGCGTCGACG TGCCGGGGTC GACCACCGCC
AACGGCACGC AGCTCCAGCT GTGGGACTGC CACGGCCAGC CGAACCAGTC GTGGGCGCTC
AACTCCGCCA AGCAGCTGGT CAACGGCGCC AAGTGCCTGG ACGCCTCCGG CCACGGCACG
GCCAACGGCA CGCAGGTCGT GCTCTGGGAC TGCCACGGCG ACACGAACCA GCAGTGGACC
GCCAACGCCG ACGGCACGAT CATCGGCGTC CAGTCCGGCC TGTGCCTGGG CGTCGCGGGC
GGCGACACCG CCAACGGCGG CAAGCTCGTC CTGTGGTCCT GCGGCGGTCA GGCCGACCAG
CGGTGGACCC TGCGCGTCCC CGCCTGA
|
|---|
| Protein sequence | MRLPLRRLAA CAAALLAAAL LPAAPASAES NGGTRVMPLG DSITEGTQVP GGYRIGLWQR
FVSGGHRVDF VGSQFNGPAS LGDHDHQGHP GWRIDQIDAN VATWLRNTTP RSVLLHIGTN
DVLQNWNVAS APSRLSALID RITSTAPNAD VLVATIIPIA NAGQDAAART FNAAIPGIVR
SKADAGKRVH LVDMRSALTT ADLVDGVHPT AGGYDKMAAT WHNALRAIPG SIGEPGGSPG
GRLVNTASGR CVDVPGSTTA NGTQLQLWDC HGQPNQSWAL NSAKQLVNGA KCLDASGHGT
ANGTQVVLWD CHGDTNQQWT ANADGTIIGV QSGLCLGVAG GDTANGGKLV LWSCGGQADQ
RWTLRVPA
|
|---|
| |