| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_3106 |
|---|
| Symbol | |
|---|
| ID | 8327296 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Actinosynnema mirum DSM 43827 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013093 |
|---|
| Strand | - |
|---|
| Start bp | 3585645 |
|---|
| End bp | 3587291 |
|---|
| Gene Length | 1647 bp |
|---|
| Protein Length | 548 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 644943626 |
|---|
| Product | Ricin B lectin |
|---|
| Protein accession | YP_003100866 |
|---|
| Protein GI | 256377206 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3345] Alpha-galactosidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.0930028 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCTGTTC GCTCGCGCAG ACGATTAACG ACCCTGCTCC TGGCCGCGCT CGCCGCGCTG
ACCGGGGTGA CCGCGCCCAC CGCGCACCCC CCGGCGCAGG CCGCCCCCGG AAGCCCCGCG
CTGACCCCGC CGCTGGGCTG GAACAGCTGG AACAGCTTCG GCTGCGGCAT CACCGAGGGC
CAGGTGCGCC AGGCCGCCGA CGCGATGGCG TCCTCCGGGA TGCGGGACGC CGGCTACCGC
TACGTGGTCG TGGACGACTG CTGGTTCGAC CCGCAGCGCG ACAGCGCGGG CAACCTGCGC
AACCACCCGA CGAAGTTCCC CTCCGGCATG AAGGCGCTGG GCGACTACAT CCACGGCAAG
GGCCTGAAGT TCGGCATCTA CCAGGCCCCC AACGAGAAGA CCTGCGCCCA GGGCACAGGC
GCGCACCCCG GCGCCACCGG CAGCAAGGGC CACGAGGCGC AGGACGCCCG CTCGTTCGCC
TCCTGGGGCG TGGACTACCT GAAGTACGAC TGGTGCTCCG GCGCGGGCAC CCGCGACGAG
CAGATCGCCC GGTTCACGAT CATGCGCGAC GCGCTGCGCG CCACCGGCCG CCCGATCGTC
TACAGCATCA ACCCCAACAG CTTCCACGCC ATCACCGGCG ACAAGCACGA CTGGGGCGAC
GTCGCGGACC TGTGGCGCAC CACCGAGGAC CTGCTGGACG TGTGGCAGAA CGGCAACACC
AACAGCTACC CGATGGGCGT GGGCAACGTC CTGGACGTCA CCGCGCCGCT GGCCGCCCAG
ACCGGCCCCG GCAACTGGAA CGACCCCGAC ATGCTCGTCG TCGGCAGGCC GGGGCTCACC
CTGACCGAGT CCCGCGCGCA CTTCGCGCTG TGGGCGCTGA TGGCCGCGCC GCTCATGGCG
GGCAACGACA TCCGCACCAT GTCCCCCGAG ATCAGCGCGG TGCTGCGCAA CCCCGGTCTG
ATCGCGGTCA ACCAGGACCC GCTGGGCGCG GGCGGTCGCC GGGTGCGCGA CGACGGGGCC
ACCGAGGTGT TCGCCAAGCC CCTGTCCGAC GGGTCGGTCG CGGTCGGCCT GTTCAACCGG
GGCGGCGGCG CCACCACCGT CGCCACCACG GCCGCGCAGA TCGGGTTGTC CGGCACCGGG
TTCACCCTCA CCGACCTGTG GACCGGCGGC ACGTCCACCA GCTCGGGCGC GATCTCGGCG
ACCGTGCCCG CCCACGGCGT CGCCGCCTTC CGCGTCACCG GCGGAACCCC GCTGGCGGCC
ACCACCTCGC GGCTGCGCGG GACCGGCTCG GGCCGCTGCC TGGACGTGGA CAACGCCTCC
ACGGCGGCGG GCGCGACCGT GCTGGTCTGG GACTGCCACA CCGCCGCCAA CCAGCTCTGG
ACGACCTGGG CGGGCGGCGA GGTGCGGGTG TTCGGCGACA AGTGCCTGGA CGCCTACGAG
CAGGGAACGG TCAACGGCAC GCGCGTGGTG ACCTGGCCGT GCAACGGGCA GGACAACCAG
CGGTGGGTCG TCGGCTCGGA CGGCTCGGTG CGCAACACCC GCGCCGGGCT GTGCCTGGAC
GTCGACGGCG CGGGCACGGC GAACGGCACG CGGCTGGTGC TGTGGACGTG CAACGGGCAG
GGCAACCAGC GGTGGTCCCG GACCTGA
|
|---|
| Protein sequence | MPVRSRRRLT TLLLAALAAL TGVTAPTAHP PAQAAPGSPA LTPPLGWNSW NSFGCGITEG
QVRQAADAMA SSGMRDAGYR YVVVDDCWFD PQRDSAGNLR NHPTKFPSGM KALGDYIHGK
GLKFGIYQAP NEKTCAQGTG AHPGATGSKG HEAQDARSFA SWGVDYLKYD WCSGAGTRDE
QIARFTIMRD ALRATGRPIV YSINPNSFHA ITGDKHDWGD VADLWRTTED LLDVWQNGNT
NSYPMGVGNV LDVTAPLAAQ TGPGNWNDPD MLVVGRPGLT LTESRAHFAL WALMAAPLMA
GNDIRTMSPE ISAVLRNPGL IAVNQDPLGA GGRRVRDDGA TEVFAKPLSD GSVAVGLFNR
GGGATTVATT AAQIGLSGTG FTLTDLWTGG TSTSSGAISA TVPAHGVAAF RVTGGTPLAA
TTSRLRGTGS GRCLDVDNAS TAAGATVLVW DCHTAANQLW TTWAGGEVRV FGDKCLDAYE
QGTVNGTRVV TWPCNGQDNQ RWVVGSDGSV RNTRAGLCLD VDGAGTANGT RLVLWTCNGQ
GNQRWSRT
|
|---|
| |