Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Amir_3106 |
Symbol | |
ID | 8327296 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Actinosynnema mirum DSM 43827 |
Kingdom | Bacteria |
Replicon accession | NC_013093 |
Strand | - |
Start bp | 3585645 |
End bp | 3587291 |
Gene Length | 1647 bp |
Protein Length | 548 aa |
Translation table | 11 |
GC content | 73% |
IMG OID | 644943626 |
Product | Ricin B lectin |
Protein accession | YP_003100866 |
Protein GI | 256377206 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG3345] Alpha-galactosidase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.0930028 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCCTGTTC GCTCGCGCAG ACGATTAACG ACCCTGCTCC TGGCCGCGCT CGCCGCGCTG ACCGGGGTGA CCGCGCCCAC CGCGCACCCC CCGGCGCAGG CCGCCCCCGG AAGCCCCGCG CTGACCCCGC CGCTGGGCTG GAACAGCTGG AACAGCTTCG GCTGCGGCAT CACCGAGGGC CAGGTGCGCC AGGCCGCCGA CGCGATGGCG TCCTCCGGGA TGCGGGACGC CGGCTACCGC TACGTGGTCG TGGACGACTG CTGGTTCGAC CCGCAGCGCG ACAGCGCGGG CAACCTGCGC AACCACCCGA CGAAGTTCCC CTCCGGCATG AAGGCGCTGG GCGACTACAT CCACGGCAAG GGCCTGAAGT TCGGCATCTA CCAGGCCCCC AACGAGAAGA CCTGCGCCCA GGGCACAGGC GCGCACCCCG GCGCCACCGG CAGCAAGGGC CACGAGGCGC AGGACGCCCG CTCGTTCGCC TCCTGGGGCG TGGACTACCT GAAGTACGAC TGGTGCTCCG GCGCGGGCAC CCGCGACGAG CAGATCGCCC GGTTCACGAT CATGCGCGAC GCGCTGCGCG CCACCGGCCG CCCGATCGTC TACAGCATCA ACCCCAACAG CTTCCACGCC ATCACCGGCG ACAAGCACGA CTGGGGCGAC GTCGCGGACC TGTGGCGCAC CACCGAGGAC CTGCTGGACG TGTGGCAGAA CGGCAACACC AACAGCTACC CGATGGGCGT GGGCAACGTC CTGGACGTCA CCGCGCCGCT GGCCGCCCAG ACCGGCCCCG GCAACTGGAA CGACCCCGAC ATGCTCGTCG TCGGCAGGCC GGGGCTCACC CTGACCGAGT CCCGCGCGCA CTTCGCGCTG TGGGCGCTGA TGGCCGCGCC GCTCATGGCG GGCAACGACA TCCGCACCAT GTCCCCCGAG ATCAGCGCGG TGCTGCGCAA CCCCGGTCTG ATCGCGGTCA ACCAGGACCC GCTGGGCGCG GGCGGTCGCC GGGTGCGCGA CGACGGGGCC ACCGAGGTGT TCGCCAAGCC CCTGTCCGAC GGGTCGGTCG CGGTCGGCCT GTTCAACCGG GGCGGCGGCG CCACCACCGT CGCCACCACG GCCGCGCAGA TCGGGTTGTC CGGCACCGGG TTCACCCTCA CCGACCTGTG GACCGGCGGC ACGTCCACCA GCTCGGGCGC GATCTCGGCG ACCGTGCCCG CCCACGGCGT CGCCGCCTTC CGCGTCACCG GCGGAACCCC GCTGGCGGCC ACCACCTCGC GGCTGCGCGG GACCGGCTCG GGCCGCTGCC TGGACGTGGA CAACGCCTCC ACGGCGGCGG GCGCGACCGT GCTGGTCTGG GACTGCCACA CCGCCGCCAA CCAGCTCTGG ACGACCTGGG CGGGCGGCGA GGTGCGGGTG TTCGGCGACA AGTGCCTGGA CGCCTACGAG CAGGGAACGG TCAACGGCAC GCGCGTGGTG ACCTGGCCGT GCAACGGGCA GGACAACCAG CGGTGGGTCG TCGGCTCGGA CGGCTCGGTG CGCAACACCC GCGCCGGGCT GTGCCTGGAC GTCGACGGCG CGGGCACGGC GAACGGCACG CGGCTGGTGC TGTGGACGTG CAACGGGCAG GGCAACCAGC GGTGGTCCCG GACCTGA
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Protein sequence | MPVRSRRRLT TLLLAALAAL TGVTAPTAHP PAQAAPGSPA LTPPLGWNSW NSFGCGITEG QVRQAADAMA SSGMRDAGYR YVVVDDCWFD PQRDSAGNLR NHPTKFPSGM KALGDYIHGK GLKFGIYQAP NEKTCAQGTG AHPGATGSKG HEAQDARSFA SWGVDYLKYD WCSGAGTRDE QIARFTIMRD ALRATGRPIV YSINPNSFHA ITGDKHDWGD VADLWRTTED LLDVWQNGNT NSYPMGVGNV LDVTAPLAAQ TGPGNWNDPD MLVVGRPGLT LTESRAHFAL WALMAAPLMA GNDIRTMSPE ISAVLRNPGL IAVNQDPLGA GGRRVRDDGA TEVFAKPLSD GSVAVGLFNR GGGATTVATT AAQIGLSGTG FTLTDLWTGG TSTSSGAISA TVPAHGVAAF RVTGGTPLAA TTSRLRGTGS GRCLDVDNAS TAAGATVLVW DCHTAANQLW TTWAGGEVRV FGDKCLDAYE QGTVNGTRVV TWPCNGQDNQ RWVVGSDGSV RNTRAGLCLD VDGAGTANGT RLVLWTCNGQ GNQRWSRT
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