| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_3078 |
|---|
| Symbol | |
|---|
| ID | 8327268 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Actinosynnema mirum DSM 43827 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013093 |
|---|
| Strand | + |
|---|
| Start bp | 3556274 |
|---|
| End bp | 3558508 |
|---|
| Gene Length | 2235 bp |
|---|
| Protein Length | 744 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 644943600 |
|---|
| Product | 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase |
|---|
| Protein accession | YP_003100840 |
|---|
| Protein GI | 256377180 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0620] Methionine synthase II (cobalamin-independent) |
|---|
| TIGRFAM ID | [TIGR01371] 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGACCAGCG GTATCGGCTC GACCGTGCTC GGCTACCCCA GGATCGGCCC GCGCCGGGAG
CTCAAGCGCG CCGTCGAGTC CTACTGGGCC GGGCGCACCG ACCGGGACGC CCTGCTCGCC
ACCGCCGCCC GGCTGCGCGC GGACACCTGG CGCGACCTGC GCGAGGCGGG CCTGGACTCG
GTCCCGTCCA ACACGTTCTC GTTCTACGAC CAGGTCCTCG ACACCGCCGC CCTGGTCGGC
GCCATCCCGG CCCGCTACCG GCAGGACCAC GAGGTCGACA CCCTGTTCGC CGCCGCGCGC
GGCACCGGGT CGCTGGCCCC GCTGGAGCTG ACCAAGTGGT TCGACACCAA CTACCACTAC
CTCGTCCCCG AGATCGACGA GACCACCACG TTCGCCCTCA CGGGTGACAA GCCGCTGGCG
GAGCACCGGG AGGCGCGGGC GCAGGGCGTG CCCACCAGGC CGGTCGTGCT GGGGCCCGTG
ACGTTCCTGC TGCTGGCCAA GGGCGTCGAC CCGCTGTCCC GGCTGGACGA GCTGGTCGAG
GTGTACGCGG ACCTGCTGCG CGGGCTCGCC GACGAGGGCG TCGAGTGGGT GCAGCTGGAC
GAGCCCGCGT TCGCGGCCGA CCGCAGCGAG CGCGAGCTGG TGGCGCTGGA GCGCGCCTAC
ACCCGCCTGG CCGCCCAGTC GGCGAGGCCG CAGCTGCTGG TGACCGGCTA CTACGGCGAC
CTCGGCCGGG CGCTGGGCGT GCTGGCGGGC ACGGCGGTGG ACGCGCTGGC CGTCGACCTC
GTCGCCGGGA GCGAGGAGGG CCTGGCCGAG GTGACCGCGC TGCGCGGCAA GATCCTCGTG
GCCGGCCTGG TCGACGGCCG CAACGTGTGG CGCACCGACC TGCGCGCCGC CCTGGCGCGG
GCCGAGGCGC TGCGCCCGCT GGCGCGGGAG GTGGTGGTGT CGACGTCGTC GACGCTGCTG
CACGTGCCCT ACGACCTGGA CCAGGAGCAG GGGCTGGGGG AGGAGGTGCG CGACCGCCTG
GCGTTCGCGC GCCAGAAGGT CCACGAGGTC GTCCTCCTGG GCCGCGCGCT CGCCGAGGGC
CCGACCGAGG AGTGGGAGGC CGAGGCCGAC CGCCCCCGCC CCGCACCCCG CCACGACGGG
GCCGTCCGCT CCCGCCTGAC CGGCTTGCAG CCCGACGCCC GCACCCGCGC CCCCTACGCC
GACCGGGTGG CCGCCCAGTC CGACCTGGGG CTGCCGAGGC TGGCGACCAC GACGATCGGC
TCGTTCCCGC AGACCACCGA GATCCGCACC GCGCGCGCCG CCCTGCGCTC CGGTGAGCTG
GACCTCGACG GGTACGCGGA GCGGATGCGG ACCGAGATCG GCCGGGTGAT CGCGCTGCAG
GAGGACATCG GCCTGGACGT GCTGGTGCAC GGCGAGCCGG AGCGCAACGA CATGGTGCAG
TACTTCGCCG AGCACCTGGA CGGTGTCGCG GGCACCGAGC TGGGCTGGGT CCAGTCCTAC
GGCTCCCGCT GCGTGCGCCC GCCGATCCTG CACGGCGACG TCACCAGGCC CGAGCCGATC
ACCGTCCCGT GGACCACCCA CGCCCGTTCC CTGACCACGC GCCAGGTGAA GGGGATGCTG
ACCGGCCCGG TGACCATCCT GGCCTGGTCC TTCGTCCGCG ACGACCAGCC GCTCCGCGCC
ACCGCGGACC AGGTCGCCCT GGCGCTGCGC GACGAGATCG CCGACCTGGA GGCTGCGGGC
ACGCGCGTGA TCCAGGTGGA CGAGCCCGCG CTCCGCGAAC TCCTCCCGCT CCGCGAGGCG
GACCGGGAGG ACTACCTCGA CTGGTCCGTG TCCGCGTTCC GCCTCGCGAC GGGCGGCGCG
GCGGCGGGCA CGCAGGTGCA CACCCACCTG TGCTACTCGG AGTTCGGCGA GGTCATCGAG
GCGATCGACG CCCTGGACGC GGACGTGACC ACGATCGAGG CGGCCCGCTC GAAGATGGAG
GTGCTGGCAG ACCTGAGCGC GGCCGGTTTC GCACGCGGAG TCGGACCGGG CGTGTACGAC
ATCCACTCGC CTCGGGTGCC GGGGGAGGAG GAGCTGGTGG CGCTGATCGC GGAGGCGTCC
CGCGCGGTCC CCGGCGACCG GCTGTGGGTG AACCCGGACT GCGGCCTGAA GACGAGGGCC
TACGCGGAGG TGGAACCCGC ACTGCGGGCC TTGGTCGCGG CGGCGAAGCG CGTCCGGGAG
ACGACGACGA ACTGA
|
|---|
| Protein sequence | MTSGIGSTVL GYPRIGPRRE LKRAVESYWA GRTDRDALLA TAARLRADTW RDLREAGLDS
VPSNTFSFYD QVLDTAALVG AIPARYRQDH EVDTLFAAAR GTGSLAPLEL TKWFDTNYHY
LVPEIDETTT FALTGDKPLA EHREARAQGV PTRPVVLGPV TFLLLAKGVD PLSRLDELVE
VYADLLRGLA DEGVEWVQLD EPAFAADRSE RELVALERAY TRLAAQSARP QLLVTGYYGD
LGRALGVLAG TAVDALAVDL VAGSEEGLAE VTALRGKILV AGLVDGRNVW RTDLRAALAR
AEALRPLARE VVVSTSSTLL HVPYDLDQEQ GLGEEVRDRL AFARQKVHEV VLLGRALAEG
PTEEWEAEAD RPRPAPRHDG AVRSRLTGLQ PDARTRAPYA DRVAAQSDLG LPRLATTTIG
SFPQTTEIRT ARAALRSGEL DLDGYAERMR TEIGRVIALQ EDIGLDVLVH GEPERNDMVQ
YFAEHLDGVA GTELGWVQSY GSRCVRPPIL HGDVTRPEPI TVPWTTHARS LTTRQVKGML
TGPVTILAWS FVRDDQPLRA TADQVALALR DEIADLEAAG TRVIQVDEPA LRELLPLREA
DREDYLDWSV SAFRLATGGA AAGTQVHTHL CYSEFGEVIE AIDALDADVT TIEAARSKME
VLADLSAAGF ARGVGPGVYD IHSPRVPGEE ELVALIAEAS RAVPGDRLWV NPDCGLKTRA
YAEVEPALRA LVAAAKRVRE TTTN
|
|---|
| |