| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_3056 |
|---|
| Symbol | |
|---|
| ID | 8327246 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Actinosynnema mirum DSM 43827 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013093 |
|---|
| Strand | - |
|---|
| Start bp | 3530770 |
|---|
| End bp | 3532854 |
|---|
| Gene Length | 2085 bp |
|---|
| Protein Length | 694 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 76% |
|---|
| IMG OID | 644943579 |
|---|
| Product | RNA polymerase, sigma-24 subunit, ECF subfamily |
|---|
| Protein accession | YP_003100819 |
|---|
| Protein GI | 256377159 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.630514 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGATGCCC TCGTCGACGC CCAGGTGGTG CTGGCCGCCC AGGCGGGCGA CCCCGACGCG
GTGCGCGAGC TCGTCTCCTC GGCGCTGCCC CTGGTGCACA ACGTGGTCGC GCGGGCGCTG
CCCGGTGACG CCGACGCCGA GGACGTCGCG CAGGAGACCA TGATCCGGGT GGTGCGGCAC
GTCGGCGACC TCAAGGACCC CGAGCGGTTC CGGGCCTGGC TGGTGACCAC GACGATCCGG
CAGGTGCGCG ACCACGTGCG CGGGCGCCGC CCGGCGCTGC CGCTGGACGA GCTGCCCGAG
ACCGCCGCGC CCGGCCAGGA CCTGGCCGAG CGCACCGCGA ACCGGATGGG CCAGGTCGCC
GAGTCGCGCG AGGTGCTGGA CGCCACCCGC TGGCTCGCGC CCGCCGACCG GGAGCTGTTC
TCCCTGTGGT GGCAGGAGGT CAACGGGCTG CTCTCGCGCG CCGAGGTCGC GGGCGCGCTG
CGGCTGAGCG TGCCGCACAC GGCGGTGCGG GTGCAGCGCA TGAGGGAGCG GCTGCTGCTG
GCGCGCACGG CGCTGCGCGC GTGGCGGGCC GTGCCGCGCT GCCCGGAGCT GTCCGCGTGC
GGCGGCGTGG ACGGCGGCGA CCGGTGGTTC AAGCGCGCCA CCAAGCACGT GCGCGGCTGC
GCGCGCTGCC TGGACGTGGG CGCTCCGCGC TTCCCCGCCG AGTACTTCGC CGCGCAGGCC
GGGCTGCTGC TCGTGCCCGC CGGGTTGCAG GCCGCGGTGT CCGCGCTGCC GCAGGGCGTC
GCGCCCTCGG CGGGCGGGGC GCTCAAGGTG GTCGCCGGGT ACGCCTCGGG CAAGCCGCTG
GCCGCGGCGC TCCCCGCCGC CGGGCTGATC ACCGCCGTCG CGCTCGCGGT GTACCTGATC
CCGCTGCCGG GACAACCGGA CCCGCCGACC GAGCTGACGC TCCCGACCGC GACCGGTCGG
TCCACACCGG ACACCCCGAC CGGAACGCCG CCCGCGAGTT CCACCGCGCC GCCGACCACC
GCCACCCCGA TCAGCTTCTT CGTGTCCCCC AGGGGCAGCG ACGGCGCGGC GGGCACCGAG
CAGGACCCGT TCGCCACGCT CGGCCGGGCC GCCGCCGTGG CGCGCCCCGG TCAGACCATC
TACCTCAAGG ACGGCATCCA CCGCCCCAAC GAGGCCGTGG AGCTGACCGC CTCCGGCACG
CCCGACAAGC CCATCACACT GGCCGCCGCG TCAGGCGACC ACGTGATCCT GGACGCGAGC
CAGGTCGGCG CGCGGCCGAT GCTGACCGTG CGCGGCGCGC ACTGGGTGGT GCGCGACCTG
GAGGTCATCA AGGGCCCGGC GGGCGCGGTG GCCTGCGCCT CGTGCAGCGG CAGCACGTTC
CAGCGGCTGT CCCTGCACGA CAACCTGGGC GCCGGGCTCG CCTTCTCCGG CGCCGCGTCC
GGGAACCTGG TGGTGGACGG CGACTTCCAC CACAACCGGG ACGCCGAGGG CCGGGAGGCG
GACGGCCTCG CGTTCACCAC CGGGTCCGGC GGGGGCAACG CCGTGCGCGG CTGCCGCGCC
TACGACAACG TGGACGACGG CATCAGCCTC GGCGCCTTCG CAGGCAAGGT CACCCTGGAC
TCGAACTGGG CCTACGGCAA CGGGATCAAC CGCTGGGGCT TCCCGCGCGC CCTCGGCTCC
GGGCACGGCT TCGACCTCGG CACGGGCGGC CCGCACGCGG TGCTGCGCAG CGCGGCGTGG
AAGAACAACG GCGACGGGTT CACCAGCGCG GGCCGGGCCG GGCACGAGCT GTCCGGCAGC
AGCGCGTTCC GCAACGCCGG TGACGGCTTC GCCCTGCGCG ACGCCCCCGC CCGGCTGCGC
GACAACCTGG CGCTGGGCAA CCGCGAGCAG GCCCTGCTCG GCGACGGCGC GGTCGCGCGG
GGCAACACCT GGAACGAGCA GGGCTGGGGC GGTGACGTGC TGCGCGAGGT CGACCCCGCC
AGCGCCGAGG GCGAGCGCCG CGCCGACGGG TCGCTGCCCG CCACGTCGTT CCTGGTCAAC
ACCAAGGACC CGAGGGTGGG CGCGCCGATG ACCGGGGCCG GTTAG
|
|---|
| Protein sequence | MDALVDAQVV LAAQAGDPDA VRELVSSALP LVHNVVARAL PGDADAEDVA QETMIRVVRH
VGDLKDPERF RAWLVTTTIR QVRDHVRGRR PALPLDELPE TAAPGQDLAE RTANRMGQVA
ESREVLDATR WLAPADRELF SLWWQEVNGL LSRAEVAGAL RLSVPHTAVR VQRMRERLLL
ARTALRAWRA VPRCPELSAC GGVDGGDRWF KRATKHVRGC ARCLDVGAPR FPAEYFAAQA
GLLLVPAGLQ AAVSALPQGV APSAGGALKV VAGYASGKPL AAALPAAGLI TAVALAVYLI
PLPGQPDPPT ELTLPTATGR STPDTPTGTP PASSTAPPTT ATPISFFVSP RGSDGAAGTE
QDPFATLGRA AAVARPGQTI YLKDGIHRPN EAVELTASGT PDKPITLAAA SGDHVILDAS
QVGARPMLTV RGAHWVVRDL EVIKGPAGAV ACASCSGSTF QRLSLHDNLG AGLAFSGAAS
GNLVVDGDFH HNRDAEGREA DGLAFTTGSG GGNAVRGCRA YDNVDDGISL GAFAGKVTLD
SNWAYGNGIN RWGFPRALGS GHGFDLGTGG PHAVLRSAAW KNNGDGFTSA GRAGHELSGS
SAFRNAGDGF ALRDAPARLR DNLALGNREQ ALLGDGAVAR GNTWNEQGWG GDVLREVDPA
SAEGERRADG SLPATSFLVN TKDPRVGAPM TGAG
|
|---|
| |