Gene Amir_2916 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAmir_2916 
Symbol 
ID8327105 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameActinosynnema mirum DSM 43827 
KingdomBacteria 
Replicon accessionNC_013093 
Strand
Start bp3366690 
End bp3367475 
Gene Length786 bp 
Protein Length261 aa 
Translation table11 
GC content72% 
IMG OID644943442 
Productshort-chain dehydrogenase/reductase SDR 
Protein accessionYP_003100683 
Protein GI256377023 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.898845 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCCGGTG ACAGCAGCAA TAGCAACAAC GGCAGCAGCA ACAGGCTCAG TGGGCGGACC 
GCCATCGTCA CGGGGGCGGG CAAGGGGATC GGGGCGGGGA TCGCGCGGCG GTTGGGCGTG
GAGGGGGCGA ACGTGGTCGT CGACTACGCG GCCGATCGTG GGGCCGCCGA CGAGGTTGTC
ACGGGCATCC GCGCCGAGGG CGGGCGGGCG ATCGCGGTCA GGGCCGATGT CGCCGATCCC
GAGCAGGTCG CGGAGTTGTT CTCGGCTGCG CGTGCGGAGT TCGGGATCGT CGACGTGCTG
GTCAACAACG CTGGTGCGGT CGTGTTCGGG CCCATCGAGT CCGTGGGGGT GGCGGACTTC
CGGCGGCAGG TGGACACGAA CTTCCTCGGG CCGGTGCTGA CCACGCAGGC GTTCGCCGCT
CAGCCGGACC TGGCGGGTGG GGTCATCGTG AACGTGTCCA CCGCGGGCAC CATCGGGCTC
CCGCCGCACG CCTCGGTGTA CGTGGCCTCC AAGAGCGCGC TGGAGGCGTT CACCGTGGTG
TCCGCCAAGG AGTTGGGGCC GCGCGGCATC CGGGTGCTCG GGATCGCGCC CGGCGCCTCC
GACACCGACG GGACGCGTGC GCTCGGGTTC GTGGGATCGG AGCAGGCTGT CGCGACCGCC
GCGCAGAACC CGTTGGGGCG CATCGGGGTT CCGGACGACT ACGCGCCGGT CGTGGCGTTC
CTGGTGTCCG ACGAGGCCCG GTGGATCACC GGTGACGTGC TGCTGGTGTC GGGTGGGCAG
CGGTGA
 
Protein sequence
MSGDSSNSNN GSSNRLSGRT AIVTGAGKGI GAGIARRLGV EGANVVVDYA ADRGAADEVV 
TGIRAEGGRA IAVRADVADP EQVAELFSAA RAEFGIVDVL VNNAGAVVFG PIESVGVADF
RRQVDTNFLG PVLTTQAFAA QPDLAGGVIV NVSTAGTIGL PPHASVYVAS KSALEAFTVV
SAKELGPRGI RVLGIAPGAS DTDGTRALGF VGSEQAVATA AQNPLGRIGV PDDYAPVVAF
LVSDEARWIT GDVLLVSGGQ R