| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_2846 |
|---|
| Symbol | |
|---|
| ID | 8327035 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Actinosynnema mirum DSM 43827 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013093 |
|---|
| Strand | - |
|---|
| Start bp | 3276471 |
|---|
| End bp | 3278195 |
|---|
| Gene Length | 1725 bp |
|---|
| Protein Length | 574 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 76% |
|---|
| IMG OID | 644943380 |
|---|
| Product | thiamine pyrophosphate protein TPP binding domain protein |
|---|
| Protein accession | YP_003100621 |
|---|
| Protein GI | 256376961 |
|---|
| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0028] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGACGACCC CGCAGACCAC TCCCCGCCGA GGCGCGGACG CGCTCGTGGA GACCCTGATC
GCCCACGGGG TCACCACCCT GTTCGGCGTT CCCGGCGACA CCGGCGTCGT GCTGTACGAC
GCGCTGTTCC ACCGCACCGA CGAGATCGAG CACGTCCTGG CCCGCGACGA GCGGCACGCG
GCGGCGATGG CCGACGGGTA CGCGCGGGTC ACCAACCGGG TCGGCGTGGT CGAGGTGTCC
AGCGGCGGCG GGACCACCTA CGTGGTCGGC GGGCTCGGCG AGGCGTTCGC GTCCGGCATC
CCGGTGCTGC TGATCACCTC CGACATCCAC GCGTCCAGCC GGGGCACCGG GGCGCTGACC
GAGATCGACC AGGTCGCGCT GTTCACCGCC GTCACCAAGT GGCGCACCGT CGTGGAGAGC
GCGGACGAGG TGCCGGGCGC GGTCGCCGAG GCGCTGCGGG TCGCGGTGAG CGGGCGGCCC
GCGCCGGTCG CGGTGATCGT GCCGGAGAAC GTGCTGGAGG AGCTGACGTC CGCTCCGGTC
CCGGTCACGA CGGCGGTGGT CCCGGCGGGG CGTCCGCTCG CCGACGCGGG CGCGGTGGCC
GAGGCGGTCC GGTTGCTGGC GGGCGCCGAG CGGCCGGTGG TGGTCGCCGG GGGCGGCGTG
CACCTGTCCG GCGCGCACGC CGGGGTCGCC GAGCTGGCGG CGCGGCTCGG CGCGGGGGTG
GCGGGCACGA TCCACGGGCG TGGCGCGGTC GCCACCGACG ACCCGTGGTG GCTGGGCCTG
GTCGGCAACA ACTCCGGGCA GCCGGGGACG AACGCGCACG TCGCGGCGGC GGACGTGGTG
CTGCTGGTCG GCACGCGCGG CAACGCCACC GACACCAACT CGTGGACCGC CCCGGCGCGC
ACCGGTCAGG CCGTGGTGCA GATCGACGTC GACGCGGCGC GGGCCGGGCG GAACTTCCCC
GGTTCCACGG CGCTCGTCGG CGACTGCCGC GCGGTGCTCG GTCAGCTCCT GGACGCGCTG
GAGCCCACGC CCGAGGCGGT GCTGCGCGAG CGGGCCGAGG CCGTCGCGGA GGCGCGCGGG
AACGCCACGC CGCGCACCGA GGGCGGTGAG CACGCGCCGG GCGTGCTGTA CCCGAGGGCG
GTCGTGGAGC TGCTGCACGA GCTGCTCGGC GAGGACGTCG TGGTCGTGGC CGACCCCGGC
ACGCCCACGC CGAACACCGC CGCGTTCTGG CCGCAGGCGC GGGCGGGCCG CAAGGTGGTC
ATCCCGCGCG GGCACGGGCC GATGGGCTAC GCGATCCCGG CTGCGATCGG GGTCGCCAAG
GCCCTGCCGG GCACGCGGGT GGTGAGCGTG ACGGCGGACG GGAGCTTCGC GATGGCGTGC
GGCGAGCTGG AGACGGCGGC CAGGTTCAGC CTACCCGTCC TGTTCGTCCA GTTCACGAAC
CACAGCATGG GCTGGATCAA GATGCTCCAG CACCTGTACA CCGAGGGCCG CTACTTCGGC
GTCGACCCCG GCCCGGTGGA CGCGGCGCTG GTCGCGCGGG CGAACGGGGT CGAGGGCACG
GCCGTGACGT CGCTGGAGGA GCTGCGGGCC GCCGTGGTCG ACTTCGTGGA GGACCCACGA
CCGAGGTACC TCGACGTGGT GGTGCCGCAC ATGATCGACT ACAGCCCGCC GGTGCCCGCC
TGGGACCGGG GTCTGGCCGG GGACACCACC CGGCCGGTCT ACTGA
|
|---|
| Protein sequence | MTTPQTTPRR GADALVETLI AHGVTTLFGV PGDTGVVLYD ALFHRTDEIE HVLARDERHA
AAMADGYARV TNRVGVVEVS SGGGTTYVVG GLGEAFASGI PVLLITSDIH ASSRGTGALT
EIDQVALFTA VTKWRTVVES ADEVPGAVAE ALRVAVSGRP APVAVIVPEN VLEELTSAPV
PVTTAVVPAG RPLADAGAVA EAVRLLAGAE RPVVVAGGGV HLSGAHAGVA ELAARLGAGV
AGTIHGRGAV ATDDPWWLGL VGNNSGQPGT NAHVAAADVV LLVGTRGNAT DTNSWTAPAR
TGQAVVQIDV DAARAGRNFP GSTALVGDCR AVLGQLLDAL EPTPEAVLRE RAEAVAEARG
NATPRTEGGE HAPGVLYPRA VVELLHELLG EDVVVVADPG TPTPNTAAFW PQARAGRKVV
IPRGHGPMGY AIPAAIGVAK ALPGTRVVSV TADGSFAMAC GELETAARFS LPVLFVQFTN
HSMGWIKMLQ HLYTEGRYFG VDPGPVDAAL VARANGVEGT AVTSLEELRA AVVDFVEDPR
PRYLDVVVPH MIDYSPPVPA WDRGLAGDTT RPVY
|
|---|
| |