Gene Amir_2781 details

Gene Information

• Locus tag: Amir_2781
• ID: 8326970
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Actinosynnema mirum DSM 43827
• Kingdom: Bacteria
• Replicon accession: NC_013093
• Strand: +
• Start bp: 3207073
• End bp: 3209118
• Gene Length: 2046 bp
• Protein Length: 681 aa
• Translation table: 11
• GC content: 69%
• IMG OID: 644943319
• Product: glycoside hydrolase family 5
• Protein accession: YP_003100560
• Protein GI: 256376900
• COG category: [G] Carbohydrate transport and metabolism
• COG ID: [COG2730] Endoglucanase

Plasmid Coverage information

• Num covering plasmid clones: 10
• Plasmid unclonability p-value: 0.183868
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGCTCACCG CCGTCGCCAC CCTCGTCGGC GCGAGCTTCT CCGCCCCGCG CCCCGCCTCC 
GCCGAGGCCA CCGCCGACGC CGCGGGCTGC AAGGTCGACT ACACCGTCAC CAGCCAGTGG 
CAGAACGGCT TCTCCGGCGA CGTGCGCATC ACCAACCTCG GCGACGCGAT CAACGGCTGG 
ACCCTGACCT GGGCCTTCCC GAACGGCCAG GCCGTCTCCC AGGCGTGGAA CGCGAACGTC 
ACCTCCTCGG GCGCGACCGC CACCGCCACC AACGTCTCCT ACAACGCCGC GATCCCCACG 
AACGGCTCCG TCCAGTTCGG GTTCAACGGC TCCTGGAGCG GCACGAACGG CGTCCCGACC 
TCCTTCACCC TCAACGGGAC CGCGTGCACC GGCGGCGTCG CGCCGACCAC CACGACCACG 
CCCGTCACCA CGACCACCCC GAACCAGCCG CCCGGTGACG CCATGGCCAC CGTCGCGGCC 
ATGCAGCCCG GCTGGAACCT CGGCAACTCG CTCGACGCCA CCGGCTCCGA CGAGACCTCC 
TGGGGCAACC CGCGCATCAC CGAGGCGCTG CTGGACAACG TGCGCTCGCA GGGCTTCAAC 
AGCATCCGCA TCCCCGTCAC CTGGGGCCAG CACCAGGGCT CCGGCCCGAG CTACACCATC 
GATCCCGCGT ACCTGAGCCG AGTCAAGGAG GTCGTCGGCT GGGCCCTCGC CGACGGCTTC 
TACGTGCTGC TCAACGTCCA CCACGACTCG TGGCAGTGGA TCAACACCAT GCCGAGCGAC 
CGCGCCAACG TGCTCGCCCG CTACAACGCC ACGTGGACCC AGCTGGCCTC GGCGTTCAAG 
GACTCCTCGT CGAAGCTGCT GCTGGAGAGC GTCAACGAGC CGCAGTTCAC CGGCAGCTCC 
GGCGACGCCC AGAACGCGCA GCTGCTGGGC GAGCTCAACA CCTCGTTCCA CCGCATCGTC 
CGCGCCTCCG GCGGTGGCAA CGCCACCCGC CTCCTGGTCC TGCCCACCCT GCACACCTCG 
GCCGACCAGG CGCGCATCGA CGAGCTGAAC ACCACGCTCA CCGCGCTGAA CGACCGCAAC 
ATCGCCGCGA CCGTCCACTA CTACGGCTAC TGGCCGTTCA GCGTGAACGT CGCGGGCGGC 
ACCAGGTTCG ACGCCACCGC GCAGAAGGAC CTGACCGACT ACCTCGACCG CGCCCACGAC 
TCGTTCGTCG CGCGCGGAAT CCCGGTGATC CTCGGCGAGT ACGGCCTGCT CGGCTTCGAC 
CGGCACACCG GCACGATCGA GCAGGGCGAG AAGCTGAAGT TCTTCGAGCT CTTCGGCTAC 
TACGCCAAGC AGCGCAAGAT CACCACCATG CTGTGGGACA ACGGCCAGCA CCTCGGCCGC 
ACCTCGTTCC AGTGGAGCGA CCCGGAGCTG ATCGCCCAGA TCAAGTCGAG CTGGACCACC 
CGCTCCGGCA CCGCCTCCAC CGACCAGGTG TTCAGCGCCA AGTCCTCCGC GATCACCGCG 
AAGACGATCA CGCTGAACCT GAACGGGACG ACGTTCTCGG GACTGCGCAA CGGTTCCGCG 
GACCTGGTGC GCGGCACCGA CTACACCGTC TCCGGCGACC AGCTCACCCT GTCCGCCGCG 
CTGATCACCC GGCTGTCCGG CGCGCGCGCC TACGGCGTCA ACGCCACCCT GTCCGCCCGG 
TTCTCCGCGG GCGTGCCGTG GCGGATCGAC CTGATCACCT ACGACACCCC CGTGCTGCAG 
AACGCCACCG GCACCACGAG CGCCTTCTCG ATCCCCACGA ACTTCCGGGG CGACCGGCTG 
GCCACGATGG AGGCCAAGTA CGCGGACGGC TCCAACGCCG GACCGCAGAA CTGGACCTCC 
TTCAAGGAGT ACGACCACAC CTTCGCCCCG GACTACGCGG CCGGCGCCAC GCTGCTCAAG 
CCGGAGTTCT TCGCCGAGGT CAACGCGGGC CAGCGGGTCA CCCTGACGTT CCACTACTGG 
AGCGGGACCA CGCTGACCTA CCACATCACC AAGAACGGCA CGTCGGTCAC CGGCACCACG 
TCCTGA 

 

Protein sequence

MLTAVATLVG ASFSAPRPAS AEATADAAGC KVDYTVTSQW QNGFSGDVRI TNLGDAINGW 
TLTWAFPNGQ AVSQAWNANV TSSGATATAT NVSYNAAIPT NGSVQFGFNG SWSGTNGVPT 
SFTLNGTACT GGVAPTTTTT PVTTTTPNQP PGDAMATVAA MQPGWNLGNS LDATGSDETS 
WGNPRITEAL LDNVRSQGFN SIRIPVTWGQ HQGSGPSYTI DPAYLSRVKE VVGWALADGF 
YVLLNVHHDS WQWINTMPSD RANVLARYNA TWTQLASAFK DSSSKLLLES VNEPQFTGSS 
GDAQNAQLLG ELNTSFHRIV RASGGGNATR LLVLPTLHTS ADQARIDELN TTLTALNDRN 
IAATVHYYGY WPFSVNVAGG TRFDATAQKD LTDYLDRAHD SFVARGIPVI LGEYGLLGFD 
RHTGTIEQGE KLKFFELFGY YAKQRKITTM LWDNGQHLGR TSFQWSDPEL IAQIKSSWTT 
RSGTASTDQV FSAKSSAITA KTITLNLNGT TFSGLRNGSA DLVRGTDYTV SGDQLTLSAA 
LITRLSGARA YGVNATLSAR FSAGVPWRID LITYDTPVLQ NATGTTSAFS IPTNFRGDRL 
ATMEAKYADG SNAGPQNWTS FKEYDHTFAP DYAAGATLLK PEFFAEVNAG QRVTLTFHYW 
SGTTLTYHIT KNGTSVTGTT S