Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Amir_2750 |
Symbol | |
ID | 8326939 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Actinosynnema mirum DSM 43827 |
Kingdom | Bacteria |
Replicon accession | NC_013093 |
Strand | + |
Start bp | 3164541 |
End bp | 3171884 |
Gene Length | 7344 bp |
Protein Length | 2447 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 644943288 |
Product | YD repeat protein |
Protein accession | YP_003100529 |
Protein GI | 256376869 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3209] Rhs family protein |
TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGCATCGCA GATCAACACC CTGGTTCCAC CACCCCTTCT TCCGCAGATC CATCGCACTG GGCACCGCCG TCATCCTCGG TGCCGCCCTC GTCCAACCGA CGGCCAACGC CCAGCAGGCC CCGGTCCAGG CCCAGCTCCA ACCGGGCAAG GCCGAAGACC TCCCACCGCT TCCCAGCCAC CCCGGTGACG CCGTCACCCC CGAGTGGCCT GCGGGCGACT ACGGGCAGTT GGAGCAGGCC GCCCCCCGGA TCGCCGACCC CGACGCGCCC GCCCGCAAGG CCGCGGGCGA GCAGGTCGGC TACGTCGAGG GCGAGTCGAA ACTGGTGGAG CGCAAGCCCA CCACCGACAT CTACGCCAAC CCCGACGGCA CCAAGGCCGC CAAGCTCTAC CAGGACGTGG TCAACGTTCC CGAGGACGGC GACGGCGCGC TCGTGCCCGT CGACCTCACG TTGGAGAGCG AAGGCGGCCG CATCAAGCCC AAGCAGGCCG CAGCCCAGGT CAGCCTGCCC GAGCGCACCG ACGGCGACGC CGCCATCTCC GTGACCACCC CGGAGGGCGG CCAGCGCGCC TCGCTGGAGT TCGAGGGCCT CGCCGACCGG GCTGCCGAGA TCGACGGCCA GATCGCCACC TACCGCGACG TCCAGCCCGG CGTCGACCTG GAGCTGTACT CGATGGCCTC CGGTGCGAAG CACGTGTTCG TGCTGCACCG CGCTGTCGAG GAGGTCGAGT GGCACTTCAC CCTGGACGTC CCGCCCGGCC ACACCCCCGA GCAGCAGAGC GACGGCGCGA TCCTGGTCAA GGACGCCGAC GGCGCCGTGA AGTTCGTCGT GGCCGCCCCC AAGATGTGGG ACGACGTGCG TGACGAGCGC TCCGCGGAGT GGCGCACCGG CCCGGTGACC CAGCGGCTCG AACGCGCGGG CGACACCTGG AAGGTCGTGC TCGTCGCCGA CCGCGCCTGG GTCGACGCCC CCGAGCGCAA GTTCCCGATC AAGGTCGATC CCGGCCTGCA CACCCTGTAC GCGGCCTTTG ACGCTTATGT CTCCGATGCC TTCAAGGACA CGAACTACGA CGTGGACTGG GAAAGCGGCC TCGGCTACGT CAACAAGGTC GGCTACTGGC CCGGCGCGGG GGAGAACCGC ACCTACGCGT TCTACGACTT CCTGCCGCAC GTGTGGGGCA AGCAGATCGT GAACGCCACG TGGAACGCCT ACTGGGTGAA CTCGCACCTG GCCACCCCGA CCAACGTGCG CATCCGGGAC GTGGCTTGCG ACTGGGGCCG CACCTCGATC ACCTGGAACA ACCAGCCCTG CCTCGGCGCC GCCACGAAGA ACTCCACCGG CGTCGGCGGC AAGCCCACCA CGATCGACAT CACCGACTGG GTCGCCTGGT GGGCGGGCGG CGGCGGCAAC TACCGCGGCA TCGCGGTCGA CACCACCGAG GGGCAGAACG GCTGGAAGAA GATGGCCGCA GCCGAGGCGG GCCCCAGCGG CGGCGCCTCG GCCGTGATCA TCAGCTACAA CGACCACCCC ACCCAGCCCG CGAACCTCGG CTGCACCGAC TGCACCCCCC ACAGTCGGGA GGTGCAGCTG CGCGTCAAGA GCGATGACGC CAACAACGAC AAGCGCATCG TCCAGTACTT CGTCTCCACC GAGACGAACG TCATGGACAC CTACTTCGCG TCAGGTCAGG CGGAGATCCA GCCGGGCCAG GGCGAAGCCG GCTGGCAGCC GCCGAAGGAA TCGTTGCGCT GGAACCAGAA GTACTTCTGG CAGGCCCGCG TGCGCGACGA CCACATGCCC TCCGGTTCGT GGGTGTACTC GTCGGTCTGG AACTTCACCC CGATCAACCA GACCCCGCCG GTGCCTCCGC AGAACAAGCC CGTCGACCGA GCCGTGGTCT CCACCAAGCA GCCGGTGCTC GGCGCCGGGG CGGTGACCGA CCCGGACGCC GGTGACGTCG TCCAGTACGA GTTCAGCATC GCCACCGGCA AGGACGGCCG CACCGGCCTC GTCGCCAAGT CCGGCTGGAT CGACAAGCCC GAGTGGACCG TGCCGAACGG CGTCCTCAAG GACGGCGTCG GCTACACCTG GACCGTGCGC AGCCGCGACC GTGACCAGGA CTCCTGGTCC CAGTACGCCG CCGCCCGCCA ACTGCGCCTG GACATGCGGG TCGGCTCCCA GTCCGTCGTG GCCACGGACA CCACCGGCCC GTTGAGCATC AACCTCGCCA ACGGCAACCT CAGCACGGGC CTCTCCACGC CGAGGATGAG CACCGTCGGA GGCGAGGTCG GCCTGAACCT GGCCTACAAC TCACTGCTGG TCGAGGAGTC CGGTCTGGTC GGCTCCTACT TCACCGGTGA CTCCCGAACC GGCATCCTCG ACACCGAGGA GCCCGTGCTG GTGCGCACCG ACCCGCAGGT GTCGTTCAAC TGGGGCGACC AGTCCCCGTA CGATCCGGTC GTGGGGAGGG ACGGCTTCCG CATCCGCTGG CAGGGCTTCC TGAAGGTGCC CACCTCGGGC TCCTACGCCC TCGGCGGTCA GTACGACGAC GGTCTGCGCG TGTGGATCGG CGACGACAAG GTCTTCGACC AGTGGACCGA CAACTGCACT TGCGGCGGTC CCGCCAAGTT CGACGGCGCG GTCGCCAAGC AGCTCAGCGC GGGCGTCGCC TACCCCGTCC GAATCGAGTA CCGCGAGTTC TCCGGCCCCG CCGACATCGC GCTCTGGGCC CGGCACGGCG ACGGCCAGGC CGTCCCGGTG CCCGCCTCCT GGTTCACCCC CACCGCGTCC GCGCTGCCAT CCGGTTGGAC TCTGTCCGCC GACGTGGCCG CGGTGGGCAA CGGCTACACC AAGGCGAGTC TGACCGAGTC CGGCGTCACG ATCACCGACA GCACCGGTGC CTCACACGCG TACAGCAAGA CCTCCGACGG CGGGTACCGA CCGCCCGCGG GGGAGTACGG CACACTGTCC CGCGACGAGG GCGGCAAGCT CACCCTCATC GACACCGATG GCTCCACCCA CGTGTTCGGC GCCTCGGGCC AACTGGAGGC GGTCACCTCG CCCGCCGACG CCCGAAAGCC CGCAGCGGCG CGCCTGGAGT GGACCCAGTC CGACCTGACC AGTCCCGTCC CCAGGCTGAC GAAGATCACC GACCCGGTGT CGGGCCGCGC GATCACCCTG CACTACGCCG GTGACCAGGC GTGCGCGCCC CCTGGCGGCT ACCACCCGAC CCCGCCGGGC TTCCTGTGCG CGGTCAAGAT GCCCGACGGC GCCACCAGCA ACCTGTTCTA CCTCAACGGA AGGCTGGGCC GCTTCCAGAA CCCCGGCGGC GAGTACCACG ACTTCGGGTT CAACGAGCAC CACCTGCTCG ACCAGCTGCG CACCCCGCTG GCGATCGAGT GGATCGTCGC CGACTCCCTG AAGCGCGACT CGTACGCGCC GAACTACCGC GTCGACTACG ACGGGCCGAC CAGCAGGCGC GCTGCCAAGC TCTCCTCGCC GGAACCGACC GGCTTCGAGC AGAACCCCAC GCGGCGCGTC CAGCACACCT ACTCCTACGG CTCCGACTCG ACCGAGGTCG CCATCGTCGG CATGGCCACC GGTCCCGGTT TCGCGAGGAA GGTCACCCGA GACCTCGGCG GCCGCACCCT GACCGACACC GACGGCTCCG GGCGCACCAA GCGCCACGAG TGGGCCGAGG ACGACAAGCA GCTCTCGGTC ACCGACTCGG CGGGCCGCAA GTCCACCACC GTCTACGACG CCAAGGGCAA CCCCACCGAG TCCTACGGCC CGGCGCCCGC CCGCTGCTTC GGCGGCGACC GCCGTCCGCT GGCCCCGGCC CCTGAGGGCT GCGACAAGAT CCCCACCAGC CGGACCGGCT ACGACGAGGG CTTCACCGGC CTGGGCGCCA CCTGGTGGAA CAACCCCTCG TTCTCCGGTG ACGCCACCGC CTACAGCACC TCCCCGGTGA ACACCGACTG GCGGGCCTCC GCGCCCGTCA CCGACGTCGA CTTCACCTCG GCGCTCTCCG GCCGCCTGAC CGGCGCGCTG GACGTGCGGA CCGCAGGCTC CTACGAGTTC TCCACCACCG AGGACGATCC CTCGGACGGC CTGCGCGTCT ACGTCGACGA CAACCTCGTC CTCGACCGCA CCTACTCCTC CCAGGTCCTC GCCAGCGGCC CCCTCGGCTA CTGGCGGCTG GGGGAGAACA CCACCACCAT GCGGGACTCC TCAGGGCACG GCCGCGACGG GACCTACTCC GGTTCCGCCA AGCAGTGGCA GGCCGGAGCG CTCCCGGACG ACCAGAGCAC GTCGGTGGAC TTCCACGGTG GCCAGGCGCA GGTCGCGCCC GCGCCGTTCG ACCTGGAGGG CGCGCTCACC CTGGAGGCGT GGGTCAAACC GCGCCCGAAC GACGCCAAGG GCGGCTGGCA GGACATCATC AGCCGCTGGA ACGGCGGCGA CGACAAGGCG ATGCCCTACG AGTTCACCAT CACCCCCGAG GGCAAGCTGG AGTTCCGGCA GATCGGCGCG ACACCCGGCA TCCGGCGGAC GGTGTCCGAC GACTCCGTGT CGCTGAACCA GTGGAACCAC GCCGTCGTCA CGCGCGGCGC CGACAACCAG ATCACCTTCT ACCTCAACGG GAAGAAGTCC GGCGGCGCCA AGCTCGCGGT TCCGGCCAAG GTCAATGCCG TCCCGCTGAC CATCGGCAAC CGGCCGGGCG GCGCCACCAC CGATGCCCTC CTCGACGAGG TCGCGGTGTA CGACCGGGCG CTCACCGAGA AGGAGGTTGC CGGGCATAGC GGCGCGGCGG GCGCGGTGAA CACGCCCAAG ACCAAGAGCA CCCTGTCCCA GGGCAGTCAC CGCGTTCGGG TCGAGTACTC GCAGCGCGCG CTCACCGGCA ACCTGACCAG GGAAACCGGC GCGGCCGCCG TGCTGTGGAA GCGTGACGGC GAGACGGCCA CCACCGTGCC CGCCGACGTC CTCACCCCCG ACTACGGCCT GACCACCTCG ACCACGACCG CCGACTCGGA CAGCAGGCCC GACCGCAGGA CCACCACGTC CTACACCGGG GAGGGGCACG ACCCGGCGTA CGGCCTGGTC ACCTCCACGG CGCTGGACCC CGCAGGCCTG AACCTGGTCA ACGGCACCGG GTACGAGAAG CCCGGCGACG GCCTGCTGCG CCGGACCACC CGCACGCTGC CCAGCGGCAC GCCGATGGCC CACACCTACT ACGGCAACAC CGAGACCAGG CCCAATCCCT GTCAGCCGGG GGCTGAGCCG GTTGTCCAGT CCGGGTTGAG CAAGACCTCG GGCGGGGTGT CCGGCCGGGT CGACGAGCGG GTCTACGACC TGCGCGGCCG GGTGGTCGCC GAGGCCGCGC CTGGTGGCTG GACCTGCACC GCGTACGACA GCCGGGGGCG GATGACGAAG ATCGCGCACC CGGCGAGCGG CTCCACGCCG GCCCGCGTGG TGTCCTACGA CTACGCCGTC GGCGGCGACC CGCTGGCGAC CTCGGTGTCC GACTCCGCGG GGACCATCAC CACCAGGGTC GACCTGCTGG GCCGGATCGC CTCCTACACC GACGTCCACG GCCTGACCAC CATCCCGGAG CTGGACCTCG GTGGCCGGGT GGTCCGAGAG ACCACGAAGG CGCCTGGCCA GGCCGGTGAC CTGCCCGCGA CCGAGACGAC CTACGACGAC GCAGGTCGTG TGCTCACTCT CCGCGTCGGC GGAGAGCTGG TGGCCACCGC CACCTACGAC AGCGCCGGTG AGCTGTCCGG TGTCACCTAC GGCAATGGTT CCGCGCTCCG CTCGCTCGGA CAGGACGCGT CCGGGCGGGT CACGTCGCTG GCGTGGCGCA CCTCGGACGG CCGCGACGTG GTCTCCTCGG TGACCAGGTC GAAGTCCGGC ATGGTCGTGG ACGAGTCGCT GGGCGGGGTG GACGCCCGCC CCGACGGTCC GAACTACTCG TACGACGCGG CGGGCAGGCT CGTGGAGGCC TACGTCCCAG GCCACCACTA CAGCTACGAC TTCACCTCCC CCGTACCCCA GGGGTGTCCC GAGGGGACGG TCGGCAACGC TGGTCGCAAC ACCAACCGGG TCCGCTTGGT GGACCGCACC GCGTCCGGCA CCACCGAGAC CGGCTACTGC TACGACAGCG CGGACCGGCT CGTCGCCGTG GTGGGGGACA CCCAGGTGAC GGATATCCGC TACGACGAGA GCGGCAACAC CACCCGCTTC ACCTCGGGCG GCTCGACCAC CCACCTGGAG TGGGACTCCG AGGGCCGCAA CACCTCGGCC CGCTCGGAAG GCGTGGATCC CGCCGAGGTG ACCTACCGGC GTGACGCGCA GGGCCGCATC GTGGAGCGCG TCGAGGTCGT CGGCGGCAAG AGCAGGGGCA ACAGCTACGG CCACACCGCT GACGGGGACA CCGCGGACGT GATCCTGGAC GCGGCAGGCC AGGTCGTGTC CAGGACGGTG TCGCTGCCCG GTGGCGCGCT GCTCACCCTG CGCGGTGACG GCACCACCTA CGATCACCCG AGCGTGCGCG GCGACCTGGT GCTCACCACG GACGCGAAGG GCGAGCAGGT CGGCGAACTG CCCTTCTACA GTCCGTTCGG CGAACCGCTC AAGCCCAACG GCACGCCCGA CGCTGACGCC GTCCCGGACA ACCTGCCGGA CGGGGTCGAC TACGGGTGGC TCGGCCAGCA CCAGCGGCCG TACGAGCACG CGGGGGCGCT GTCGCTGGTC CAGATGGGCG CACGGCCGTA CAGCCCGCTG CTGGGGCGGT TCCTGTCGAT CGACCCGGTG GACGGTGGCA GCGCCAACGA TTACGACTAC GCCAACGGCG ACCCGGTCAA CCAGCTCGAC CTGGACGGCA ACTGGCCGGA CTGGGGGAAG GTGGGCAGCT TCGTCATGAA GAACCGAGGC ACCATCGCCA GTGCTGGCGC CGCCGTGGGC TGCATGCTCA CGGGCCTGCT GGCCTGCGGT ATTTTCACTG CAGGAGCCTA CGCGGTCAAT GCCCAGCAGC GCATCGCTGA ACAGGGCTTC CGCAAGTCGC TCAAGGCGAA CGCGGCCGAC CTGGTGCTCA CAGTGGGCAC GTTCGGCTTG TTCACGGTTC CCGTGGGGCT CGCCACCAAG GTCGGTGGGA CAGGGCTTCG CGCTGGAGTC TCCAACACGC CCAAGGCGCT GCAGAAGGCG AACCGCCCGG TGAACAAGAA CACCTACGCC CAAAAGCAGA TGGTGGCTGT CAACGTCATC AGCACGGTCG TCGACCCAGG GGTCGTCAAG GCTGCTTTCT GCGTCGCGAA GCAAACCGCT CGGCGAGTTG CCTGCGCGTT CTGA
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Protein sequence | MHRRSTPWFH HPFFRRSIAL GTAVILGAAL VQPTANAQQA PVQAQLQPGK AEDLPPLPSH PGDAVTPEWP AGDYGQLEQA APRIADPDAP ARKAAGEQVG YVEGESKLVE RKPTTDIYAN PDGTKAAKLY QDVVNVPEDG DGALVPVDLT LESEGGRIKP KQAAAQVSLP ERTDGDAAIS VTTPEGGQRA SLEFEGLADR AAEIDGQIAT YRDVQPGVDL ELYSMASGAK HVFVLHRAVE EVEWHFTLDV PPGHTPEQQS DGAILVKDAD GAVKFVVAAP KMWDDVRDER SAEWRTGPVT QRLERAGDTW KVVLVADRAW VDAPERKFPI KVDPGLHTLY AAFDAYVSDA FKDTNYDVDW ESGLGYVNKV GYWPGAGENR TYAFYDFLPH VWGKQIVNAT WNAYWVNSHL ATPTNVRIRD VACDWGRTSI TWNNQPCLGA ATKNSTGVGG KPTTIDITDW VAWWAGGGGN YRGIAVDTTE GQNGWKKMAA AEAGPSGGAS AVIISYNDHP TQPANLGCTD CTPHSREVQL RVKSDDANND KRIVQYFVST ETNVMDTYFA SGQAEIQPGQ GEAGWQPPKE SLRWNQKYFW QARVRDDHMP SGSWVYSSVW NFTPINQTPP VPPQNKPVDR AVVSTKQPVL GAGAVTDPDA GDVVQYEFSI ATGKDGRTGL VAKSGWIDKP EWTVPNGVLK DGVGYTWTVR SRDRDQDSWS QYAAARQLRL DMRVGSQSVV ATDTTGPLSI NLANGNLSTG LSTPRMSTVG GEVGLNLAYN SLLVEESGLV GSYFTGDSRT GILDTEEPVL VRTDPQVSFN WGDQSPYDPV VGRDGFRIRW QGFLKVPTSG SYALGGQYDD GLRVWIGDDK VFDQWTDNCT CGGPAKFDGA VAKQLSAGVA YPVRIEYREF SGPADIALWA RHGDGQAVPV PASWFTPTAS ALPSGWTLSA DVAAVGNGYT KASLTESGVT ITDSTGASHA YSKTSDGGYR PPAGEYGTLS RDEGGKLTLI DTDGSTHVFG ASGQLEAVTS PADARKPAAA RLEWTQSDLT SPVPRLTKIT DPVSGRAITL HYAGDQACAP PGGYHPTPPG FLCAVKMPDG ATSNLFYLNG RLGRFQNPGG EYHDFGFNEH HLLDQLRTPL AIEWIVADSL KRDSYAPNYR VDYDGPTSRR AAKLSSPEPT GFEQNPTRRV QHTYSYGSDS TEVAIVGMAT GPGFARKVTR DLGGRTLTDT DGSGRTKRHE WAEDDKQLSV TDSAGRKSTT VYDAKGNPTE SYGPAPARCF GGDRRPLAPA PEGCDKIPTS RTGYDEGFTG LGATWWNNPS FSGDATAYST SPVNTDWRAS APVTDVDFTS ALSGRLTGAL DVRTAGSYEF STTEDDPSDG LRVYVDDNLV LDRTYSSQVL ASGPLGYWRL GENTTTMRDS SGHGRDGTYS GSAKQWQAGA LPDDQSTSVD FHGGQAQVAP APFDLEGALT LEAWVKPRPN DAKGGWQDII SRWNGGDDKA MPYEFTITPE GKLEFRQIGA TPGIRRTVSD DSVSLNQWNH AVVTRGADNQ ITFYLNGKKS GGAKLAVPAK VNAVPLTIGN RPGGATTDAL LDEVAVYDRA LTEKEVAGHS GAAGAVNTPK TKSTLSQGSH RVRVEYSQRA LTGNLTRETG AAAVLWKRDG ETATTVPADV LTPDYGLTTS TTTADSDSRP DRRTTTSYTG EGHDPAYGLV TSTALDPAGL NLVNGTGYEK PGDGLLRRTT RTLPSGTPMA HTYYGNTETR PNPCQPGAEP VVQSGLSKTS GGVSGRVDER VYDLRGRVVA EAAPGGWTCT AYDSRGRMTK IAHPASGSTP ARVVSYDYAV GGDPLATSVS DSAGTITTRV DLLGRIASYT DVHGLTTIPE LDLGGRVVRE TTKAPGQAGD LPATETTYDD AGRVLTLRVG GELVATATYD SAGELSGVTY GNGSALRSLG QDASGRVTSL AWRTSDGRDV VSSVTRSKSG MVVDESLGGV DARPDGPNYS YDAAGRLVEA YVPGHHYSYD FTSPVPQGCP EGTVGNAGRN TNRVRLVDRT ASGTTETGYC YDSADRLVAV VGDTQVTDIR YDESGNTTRF TSGGSTTHLE WDSEGRNTSA RSEGVDPAEV TYRRDAQGRI VERVEVVGGK SRGNSYGHTA DGDTADVILD AAGQVVSRTV SLPGGALLTL RGDGTTYDHP SVRGDLVLTT DAKGEQVGEL PFYSPFGEPL KPNGTPDADA VPDNLPDGVD YGWLGQHQRP YEHAGALSLV QMGARPYSPL LGRFLSIDPV DGGSANDYDY ANGDPVNQLD LDGNWPDWGK VGSFVMKNRG TIASAGAAVG CMLTGLLACG IFTAGAYAVN AQQRIAEQGF RKSLKANAAD LVLTVGTFGL FTVPVGLATK VGGTGLRAGV SNTPKALQKA NRPVNKNTYA QKQMVAVNVI STVVDPGVVK AAFCVAKQTA RRVACAF
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