Gene Amir_2571 details

Gene Information

• Locus tag: Amir_2571
• ID: 8326760
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Actinosynnema mirum DSM 43827
• Kingdom: Bacteria
• Replicon accession: NC_013093
• Strand: -
• Start bp: 2903217
• End bp: 2904017
• Gene Length: 801 bp
• Protein Length: 266 aa
• Translation table: 11
• GC content: 65%
• IMG OID: 644943113
• Product: Pectate lyase
• Protein accession: YP_003100354
• Protein GI: 256376694

Plasmid Coverage information

• Num covering plasmid clones: 14
• Plasmid unclonability p-value: 0.18079
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGCGCATCA GATCCAGGAA GACGTTCCAC CTCGCTGTCG CGGCACTGGC CGCGGTGGCG 
GCGGTCGGCG TGGTGAACGC GGCGACGCCG TCGACCGCGC AGGCCGCGGG AAGCAGTTTC 
CCGAGCGCCA AGGGAACGCC GCAGCCGGTC TCGAAGAGCA TCGAGGTCGG CAAGTCGCTC 
GACGGCGGGA TGAAGCGCTA CTACGGCAGC GGGAAGCTCG GGGGTGACAA CCAGAAGGAG 
GGCCAGGACC CGCTGTTCGT GCTCTCCGAC GGGGCAACGC TGTCCAACGT GGTGATCGGC 
TCCCCGGCCG CCGACGGCGT CCACTGCCTG GGAACTTGCA CGCTGAGCAA CGTGTGGTGG 
GAGGACGTCG GCGAGGACGC GGCCACCTTC AAGGGGTCGA AGTCGTCGCA GACGATGACC 
ATCAGCGGCG GCGGGGCCCG CAAGGCGTCG GACAAGGTGT TCCAGCACAA CGGTCCGGGC 
ACCATGCACA TCAAGAACTT CCAGGTCGAC GACTTCGGGA AGCTCTACCG CTCGTGCGGC 
AACTGCAAGA CCCAGCACAA GCGGAACGTG ATCATCGAGA ACGTCACCGC TTACGCGCCC 
GGCAAGTCGA TGGTGGGCAT CAACACCAAT TACGGCGACA CCGCGAAGAT CACGAAGCTG 
ACGGTGGTCG GCGACTCCAA GAAGAAGCTC TCGGTGTGCG ACAAGTACAC CGGGACCACC 
AAGGGCGAGC CGAAGAAGAC GGGCAGCGGG CCGGATGGCA AGCACTGCCA GTACTCGACC 
TCGGACGTGA CCTACAAGTA G 

 

Protein sequence

MRIRSRKTFH LAVAALAAVA AVGVVNAATP STAQAAGSSF PSAKGTPQPV SKSIEVGKSL 
DGGMKRYYGS GKLGGDNQKE GQDPLFVLSD GATLSNVVIG SPAADGVHCL GTCTLSNVWW 
EDVGEDAATF KGSKSSQTMT ISGGGARKAS DKVFQHNGPG TMHIKNFQVD DFGKLYRSCG 
NCKTQHKRNV IIENVTAYAP GKSMVGINTN YGDTAKITKL TVVGDSKKKL SVCDKYTGTT 
KGEPKKTGSG PDGKHCQYST SDVTYK