Gene Amir_2563 details

Gene Information

• Locus tag: Amir_2563
• ID: 8326752
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Actinosynnema mirum DSM 43827
• Kingdom: Bacteria
• Replicon accession: NC_013093
• Strand: -
• Start bp: 2895511
• End bp: 2896290
• Gene Length: 780 bp
• Protein Length: 259 aa
• Translation table: 11
• GC content: 67%
• IMG OID: 644943105
• Product: Pectate lyase
• Protein accession: YP_003100346
• Protein GI: 256376686

Plasmid Coverage information

• Num covering plasmid clones: 10
• Plasmid unclonability p-value: 0.0171428
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGTTGACTC GTCGAATCCT GTCCGGAATG GGCGCGCTGC TGCTGGCCGC GGTGACGGTC 
GCGGCGGGCG CGGGGAGCGC GTCGGCCGCC GGGAGCACGT TCCCGTCGCC GAACGGCTCG 
CAGGGGGTCG GGGCGAAGAT CAAGGTGTCC GGGTCGTACG ACGGTGGCCT CAAGCGGTTC 
TACGGCACCG GCGACCTGGG CAACGGTGGT CAGGACGAGG GGCAGTCGCC GCTCTTCGAG 
CTGGCCAACG GGGCCACGCT GTCCAACGTC GTGCTCGGCT CGCCCGCCGC CGACGGCGTG 
CACTGCCTGG GCGCCTGCAC GCTGAACAAC GTGTGGTGGG AGGACGTCGG CGAGGACGCC 
GCGACGCTCA AGGGCTCCTC CTCGTCGCAG AAGATGACCG TGAACGGCGG CGGGGCGCGG 
AAGGCGTCGG ACAAGGTGTT CCAGCACAAC GGGCCGGGCA CGATCCACAT CAAGAACTTC 
CAGGTCGACG ATTTCGGGAA GCTCTACCGC TCGTGCGGCA ACTGCGGCAC GCAGTACAAG 
CGGAATGTGA TCCTGGAGAA CGTGACCGCG TACTCGCCGG GCAAGGTCCT CGCCGGGATC 
AACACGAACT ACGGCGACAC CGCGAAGTAC ACGAACGTCA CGATCGTCGG CGACAGCAGC 
AAGAAGATCG TGGTGTGCGA GAAGTACAAG GGCGTCACGA GCGGCGAGCC GAGCAAGATC 
GGCAGCGGTC CGGACAGCAC GAACTGCCTG TACTCCTCGT CGAACATCAC CTACCGGTAG 

 

Protein sequence

MLTRRILSGM GALLLAAVTV AAGAGSASAA GSTFPSPNGS QGVGAKIKVS GSYDGGLKRF 
YGTGDLGNGG QDEGQSPLFE LANGATLSNV VLGSPAADGV HCLGACTLNN VWWEDVGEDA 
ATLKGSSSSQ KMTVNGGGAR KASDKVFQHN GPGTIHIKNF QVDDFGKLYR SCGNCGTQYK 
RNVILENVTA YSPGKVLAGI NTNYGDTAKY TNVTIVGDSS KKIVVCEKYK GVTSGEPSKI 
GSGPDSTNCL YSSSNITYR