Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Amir_2560 |
Symbol | |
ID | 8326749 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Actinosynnema mirum DSM 43827 |
Kingdom | Bacteria |
Replicon accession | NC_013093 |
Strand | - |
Start bp | 2888928 |
End bp | 2890898 |
Gene Length | 1971 bp |
Protein Length | 656 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 644943102 |
Product | Ricin B lectin |
Protein accession | YP_003100343 |
Protein GI | 256376683 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG5520] O-Glycosyl hydrolase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.257771 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGAAGGCGC GTGCGGCGCT CGCCGCGATC GTGGTCGCCT CGGCGGCCCT CTCCCCGGTC GGCGCGGCGC AGGCGCAGGC CCAGCAGGCG GACGTGACCG TGCGCCCCGA CCCGACCTAC CGGCAGGAGC CGTTCCAGGG CTGGGGCACG AGCCTGGTGT GGTTCGCCAA CGCCACCGGG CAGTACCCGA ACTCCGTCCG GAACGAGCTC GCCGACCTGC TGTTCTCCGC GCAGGGCCTG AACCTGAACA TCGCCCGCTA CAACATCGGC GGCGGGAACG CGCCCGACGT GCCGCCGTAC CTGCGCGCGG GTGGCGCGGT GCCCGGCTGG TGGAAGGCGC CCGAGGGCAC CACGCGCACC GACACCGACT GGTGGGAGCC CAACAACCCC GAGCTGTTCG ACGCCGAGGC CGACCCCGGT CAGCGCTGGT GGGTCGACAA GATCAAGTCG AAGGTCGACC GCTGGGAGGC GTTCAGCAAC TCCCCGCCGT GGTTCCAGAC CGTCTCCGGC TACGTCTCGG GCGGCTTCGA CGCGAACGCC GACCAGCTGC GCACCGACAA GATCGACGAG TTCACCGCCT ACCTCGCGCA GGTCGTCGAG GAGATGGAGG ACGCGCACGG CATCGAGTTC GACACCGTCG ACCCGTTCAA CGAGCCCAAC ACCAACTACT GGAGCACCCG CCTCGGCGCG GACGGCAACC CCACCGGCGG CAGGCAGGAG GGCGCGCACA TGGGCCCCGC CCTGCAGGCC AAGGTGATCC CGTCGATGGT GCAGGCGTTG CGGGACAAGG GCTTGAGCGC CGCCGTGTCC GCGCCGGACG AGACCAACCC CGGCACGTTC GCCGCCGACT GGGCGGGCTA CCCGGCGTCG GTGCGCGAGC AGGTCGGCCA GCTGAACGTG CACACCTACG GCACCGGCCA GCGCACCTCG GCCCGCGACA TCGCCAAGGG CGCGGACAAG CCGCTGTGGA TGAGCGAGGT CGACGGCTCG TGGGGCTCGG GCCAGAGCTT CACCAGCATG GACCCCGGCA TCGGCATCGC CGAGCGGGTC GTGGACGACC TGCGCGAGCT GGAGCCCCGG TCCTGGGTGC TGTGGCAGGC GATCGAGGAC TACGACAACA TGAAGCCGGG CGGGGAGTCG CCGCAGGGCG CGAACTGGGG CGTCGTGCAG GTCCCGTTCT CCTGCGCCAC CTCGGACTGC GAGGTCCGCA CCAACACGAA GTTCAACACC CTGCGGAACT TCACCCACCA CATCAAGCCG GGTGACCGGA TGATCGGCGT GAACACCACG ACCGACGTGG TGGCGATGCG CGGCGAGTCG CTCAAGACCG TGGTGCACGT GAACAAGGCC GAGCAGGCCA GGACCGTGGC GCTGGACCTG CGCTCGTTCA AGCGGATCTC GGACAACGCC GCGGTGCGGC CGGTCGTCAC GGACGCGTCG GGCGCGCTGG TCGAGGGAGC CGAGGTCGCG GTGCGCGACG GCGTGGCGAC GCTGACCGTG CCCGCCCGCT CGGTCACCAC GTTCCGGGTG TCCGGGGTCT CCGGCGCGAT CGGCGCGGAG GCGCTGGGCG CGGAGGACGC GTACCGGCTG ACCGGCGTGC AGAGCGGGAA GTCCTTGGCC CCCAGCGGGA ACTCGCTGGT GCAGCGGAAC TCGGCCGAGG TCGCCGACCA GTACTGGAGG CTGGAGCGGC TGGACAACGG GTTCGGCAAC CGGGTCCGGT TCGCCGTGGT CAACGCCGGG ACCGGGCAGC GGCTCGCGGC GGTGAACGGC GAGGCGGTGC TCCGCTCGGC GGACGGGCCG GAAGCGCGGT GGATCACGTC GTCGACCGGT GACGGCACGT GGACGCTGGT GAACGCGGCC ACGGGCGCGA TGCTGGACGT GGTGGGCCAG TCCACGGCGG ACGGGGCGAA GGTCGGGCTG TACACGCCGA CGTCCGGCCC GAACCAGCGG TGGACGGCGA CGCCGCGCTA G
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Protein sequence | MKARAALAAI VVASAALSPV GAAQAQAQQA DVTVRPDPTY RQEPFQGWGT SLVWFANATG QYPNSVRNEL ADLLFSAQGL NLNIARYNIG GGNAPDVPPY LRAGGAVPGW WKAPEGTTRT DTDWWEPNNP ELFDAEADPG QRWWVDKIKS KVDRWEAFSN SPPWFQTVSG YVSGGFDANA DQLRTDKIDE FTAYLAQVVE EMEDAHGIEF DTVDPFNEPN TNYWSTRLGA DGNPTGGRQE GAHMGPALQA KVIPSMVQAL RDKGLSAAVS APDETNPGTF AADWAGYPAS VREQVGQLNV HTYGTGQRTS ARDIAKGADK PLWMSEVDGS WGSGQSFTSM DPGIGIAERV VDDLRELEPR SWVLWQAIED YDNMKPGGES PQGANWGVVQ VPFSCATSDC EVRTNTKFNT LRNFTHHIKP GDRMIGVNTT TDVVAMRGES LKTVVHVNKA EQARTVALDL RSFKRISDNA AVRPVVTDAS GALVEGAEVA VRDGVATLTV PARSVTTFRV SGVSGAIGAE ALGAEDAYRL TGVQSGKSLA PSGNSLVQRN SAEVADQYWR LERLDNGFGN RVRFAVVNAG TGQRLAAVNG EAVLRSADGP EARWITSSTG DGTWTLVNAA TGAMLDVVGQ STADGAKVGL YTPTSGPNQR WTATPR
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