Gene Amir_2560 details

Gene Information

• Locus tag: Amir_2560
• ID: 8326749
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Actinosynnema mirum DSM 43827
• Kingdom: Bacteria
• Replicon accession: NC_013093
• Strand: -
• Start bp: 2888928
• End bp: 2890898
• Gene Length: 1971 bp
• Protein Length: 656 aa
• Translation table: 11
• GC content: 72%
• IMG OID: 644943102
• Product: Ricin B lectin
• Protein accession: YP_003100343
• Protein GI: 256376683
• COG category: [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG5520] O-Glycosyl hydrolase

Plasmid Coverage information

• Num covering plasmid clones: 11
• Plasmid unclonability p-value: 0.257771
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGAAGGCGC GTGCGGCGCT CGCCGCGATC GTGGTCGCCT CGGCGGCCCT CTCCCCGGTC 
GGCGCGGCGC AGGCGCAGGC CCAGCAGGCG GACGTGACCG TGCGCCCCGA CCCGACCTAC 
CGGCAGGAGC CGTTCCAGGG CTGGGGCACG AGCCTGGTGT GGTTCGCCAA CGCCACCGGG 
CAGTACCCGA ACTCCGTCCG GAACGAGCTC GCCGACCTGC TGTTCTCCGC GCAGGGCCTG 
AACCTGAACA TCGCCCGCTA CAACATCGGC GGCGGGAACG CGCCCGACGT GCCGCCGTAC 
CTGCGCGCGG GTGGCGCGGT GCCCGGCTGG TGGAAGGCGC CCGAGGGCAC CACGCGCACC 
GACACCGACT GGTGGGAGCC CAACAACCCC GAGCTGTTCG ACGCCGAGGC CGACCCCGGT 
CAGCGCTGGT GGGTCGACAA GATCAAGTCG AAGGTCGACC GCTGGGAGGC GTTCAGCAAC 
TCCCCGCCGT GGTTCCAGAC CGTCTCCGGC TACGTCTCGG GCGGCTTCGA CGCGAACGCC 
GACCAGCTGC GCACCGACAA GATCGACGAG TTCACCGCCT ACCTCGCGCA GGTCGTCGAG 
GAGATGGAGG ACGCGCACGG CATCGAGTTC GACACCGTCG ACCCGTTCAA CGAGCCCAAC 
ACCAACTACT GGAGCACCCG CCTCGGCGCG GACGGCAACC CCACCGGCGG CAGGCAGGAG 
GGCGCGCACA TGGGCCCCGC CCTGCAGGCC AAGGTGATCC CGTCGATGGT GCAGGCGTTG 
CGGGACAAGG GCTTGAGCGC CGCCGTGTCC GCGCCGGACG AGACCAACCC CGGCACGTTC 
GCCGCCGACT GGGCGGGCTA CCCGGCGTCG GTGCGCGAGC AGGTCGGCCA GCTGAACGTG 
CACACCTACG GCACCGGCCA GCGCACCTCG GCCCGCGACA TCGCCAAGGG CGCGGACAAG 
CCGCTGTGGA TGAGCGAGGT CGACGGCTCG TGGGGCTCGG GCCAGAGCTT CACCAGCATG 
GACCCCGGCA TCGGCATCGC CGAGCGGGTC GTGGACGACC TGCGCGAGCT GGAGCCCCGG 
TCCTGGGTGC TGTGGCAGGC GATCGAGGAC TACGACAACA TGAAGCCGGG CGGGGAGTCG 
CCGCAGGGCG CGAACTGGGG CGTCGTGCAG GTCCCGTTCT CCTGCGCCAC CTCGGACTGC 
GAGGTCCGCA CCAACACGAA GTTCAACACC CTGCGGAACT TCACCCACCA CATCAAGCCG 
GGTGACCGGA TGATCGGCGT GAACACCACG ACCGACGTGG TGGCGATGCG CGGCGAGTCG 
CTCAAGACCG TGGTGCACGT GAACAAGGCC GAGCAGGCCA GGACCGTGGC GCTGGACCTG 
CGCTCGTTCA AGCGGATCTC GGACAACGCC GCGGTGCGGC CGGTCGTCAC GGACGCGTCG 
GGCGCGCTGG TCGAGGGAGC CGAGGTCGCG GTGCGCGACG GCGTGGCGAC GCTGACCGTG 
CCCGCCCGCT CGGTCACCAC GTTCCGGGTG TCCGGGGTCT CCGGCGCGAT CGGCGCGGAG 
GCGCTGGGCG CGGAGGACGC GTACCGGCTG ACCGGCGTGC AGAGCGGGAA GTCCTTGGCC 
CCCAGCGGGA ACTCGCTGGT GCAGCGGAAC TCGGCCGAGG TCGCCGACCA GTACTGGAGG 
CTGGAGCGGC TGGACAACGG GTTCGGCAAC CGGGTCCGGT TCGCCGTGGT CAACGCCGGG 
ACCGGGCAGC GGCTCGCGGC GGTGAACGGC GAGGCGGTGC TCCGCTCGGC GGACGGGCCG 
GAAGCGCGGT GGATCACGTC GTCGACCGGT GACGGCACGT GGACGCTGGT GAACGCGGCC 
ACGGGCGCGA TGCTGGACGT GGTGGGCCAG TCCACGGCGG ACGGGGCGAA GGTCGGGCTG 
TACACGCCGA CGTCCGGCCC GAACCAGCGG TGGACGGCGA CGCCGCGCTA G 

 

Protein sequence

MKARAALAAI VVASAALSPV GAAQAQAQQA DVTVRPDPTY RQEPFQGWGT SLVWFANATG 
QYPNSVRNEL ADLLFSAQGL NLNIARYNIG GGNAPDVPPY LRAGGAVPGW WKAPEGTTRT 
DTDWWEPNNP ELFDAEADPG QRWWVDKIKS KVDRWEAFSN SPPWFQTVSG YVSGGFDANA 
DQLRTDKIDE FTAYLAQVVE EMEDAHGIEF DTVDPFNEPN TNYWSTRLGA DGNPTGGRQE 
GAHMGPALQA KVIPSMVQAL RDKGLSAAVS APDETNPGTF AADWAGYPAS VREQVGQLNV 
HTYGTGQRTS ARDIAKGADK PLWMSEVDGS WGSGQSFTSM DPGIGIAERV VDDLRELEPR 
SWVLWQAIED YDNMKPGGES PQGANWGVVQ VPFSCATSDC EVRTNTKFNT LRNFTHHIKP 
GDRMIGVNTT TDVVAMRGES LKTVVHVNKA EQARTVALDL RSFKRISDNA AVRPVVTDAS 
GALVEGAEVA VRDGVATLTV PARSVTTFRV SGVSGAIGAE ALGAEDAYRL TGVQSGKSLA 
PSGNSLVQRN SAEVADQYWR LERLDNGFGN RVRFAVVNAG TGQRLAAVNG EAVLRSADGP 
EARWITSSTG DGTWTLVNAA TGAMLDVVGQ STADGAKVGL YTPTSGPNQR WTATPR