| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_2555 |
|---|
| Symbol | |
|---|
| ID | 8326744 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Actinosynnema mirum DSM 43827 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013093 |
|---|
| Strand | + |
|---|
| Start bp | 2881596 |
|---|
| End bp | 2883752 |
|---|
| Gene Length | 2157 bp |
|---|
| Protein Length | 718 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 75% |
|---|
| IMG OID | 644943097 |
|---|
| Product | diguanylate cyclase/phosphodiesterase |
|---|
| Protein accession | YP_003100338 |
|---|
| Protein GI | 256376678 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGCCGCGG ACGTGCCTCC CGCCTCGGGC TCGGCGCACG GCACCGGTCG CAGGACGCTG
CACCGGATCA GGGTGCTGAC CACCGTCTTC GCCTGGCTCG GCGGGGTCCT CACGATCGGC
AGCCTCGTCG CGACCGGTGA GGGGCCGCTC CCGATCGGGG TGGCCGCGCT GGTCGCCGGT
GTCCTCGCGT GCTGGCTGCG GGTTCCCCGC GACGCGTGGT GGATCCCGCC GCTGGAGGGC
GTGGTCGCGT TCGCCGCGCT GCTCCTGCTG CCCGACCCGC AGGTCGTCGT GGGCTTCGTC
ATCGGCGCCA CGGTCCGCCG CGCCCTCTAC CCCGAGGACG CCGGGTTCTG GGCCAAGTCC
GCCGTGGTCG TCGGCGGCTA CCTCACCGGC CTGGCCGCGT CGCTGCTCTG GGGCTGGGGC
GCGATCCGCC CCGAGCTGCT GCCGACCCTG CTGATGCCGC TGGCGGGCAT GGCCGTCGCC
GCCGCCGCGC TGCACGAGGC CGCGCGCGCG GTGCTGCGCG CCGAGTCGGC CCAGCGCGGC
GCCGAGCACG CCCGCGCCAC CGCCACCGCC GTCCTGCAGG CCAGCCCGAT CGGCCTGGTG
CTGCTCGACT CCGGCGGCGT GCCCGTGCTG CACAACGAGC GCGCCCAGTT CCTGCTGGAC
TGGGCGGGCC AGAACGGGGC CGCCGTGCCC TGCCCGCACG GCCCCAACAT CGCGGTGTGC
GAGAAGGGCT GCCGCGACGC CGACGCCGAG CCCGTGGAGG TCTGGGTCGC CGACCGCGAC
CGCGTCCTCG CGCTGCACCC GGTGCGCGTC GAGCAGGCGG GCGACGAGGA CCGCACCCTG
GTGGCCGCCG TGGACATCAG CGTCCGCCGC CGCCTGGAGG ACGAGCTGCG GCACCGCTCC
GAGCGCGACG TCCTCACCGG CCTGACCAGC CGCTCGCACT TCCTGCACCT GCTGGACCGC
GCGCTGCGCG CGGGCGACGT CGGCCTGCTC GTGCTCGACC TGGACCAGTT CAAGGAGGTC
AACGACACCG AGGGCCACGA CGCGGGCGAC CAGTGCCTGG TGGCAGCCTC CCGCCGCATC
CGCGCCGCCG TCGAACCGGA CGCGGTCGCC GCGCGCCTGG GCGGCGACGA GTTCGCGGTG
CTGGCGCCGG GCCTGGACGA GCAGGCCTGC GGCCAGCTCG CGAAGTCCGT GCTGGCGGAG
CTGGAGAAGC CCTGGTCGGA CCTGGGGTAC GACGTGCGGA TGCAGGCCAG CATCGGCGTC
GCGGTGTCCT CGGCGGCGGC GGGGGTGGTC GGCACCGCGG AGCTGCTGCG CGACGCCGAC
ACCGCGATGT ACGTGGCCAA GCGCGAGGGC GGCGCGCGCG CCCGCTCCTT CCGCAGGGAG
ATGGGCGAGC AGGCGCTGGC CCGCCAGCGC GACAAGCTCG ACCTGCGCGC CGCGATCGGC
ACGGATCAGC TGGTCCTGCA CTACCAGCCC ATCGTGGACC TGGCCACCAC GGCGATCTCC
GGCGCGGAGG CCCTGGTCCG CTGGGAGCGG CCGGGGCGGG GGCTGCTCGG ACCGGGCGAG
TTCATCGGCC TGGCCGAGCA GACCGGCCTG ATCGTGCCGC TGGGGTCGAG CGTGCTCACC
TCCGCGTGCA CCCAGGCCGC TGGTTGGCGC GCGGCCGGGC GCGAGCTGGG CGTCACGGTC
AACGTGTCCA CCAGGCAGCT GTCCGCGCCC GGTTTCCTGG CCGCGCTGGC GAAGTCCCTG
GACGTGTCGG GCTTGCAGGC CTCGGCGCTG ACCATCGAGG TGACCGAGTC GGTGTGGGCG
GACGAGGCGG CGATGCGGGC GCTGATGGCG GTGCGGGAGA CGGGCGTGCG GGTGGCCCTG
GACGACTTCG GCACCGGCTA CTCGTCCCTG AGCTACCTGC ACCGCTACCC GTTCGACGTG
GTGAAGATCG ACAAGTCGTT CACCTGGGCC CTCGGCGACA CCGGCCGCAC GGCGGGCGTG
GTGCGCTGCA TCATCGACCT GGCGGACGTG CTGGGCGCGG TCACCGTCGC GGAGGGCATC
GAGACGCCGG AGCAGGCGGA GTGGCTGCGC AGGGCGGGGT GCGGGTTCGG GCAGGGCTTC
TTGTTCGGCC GCCCTGATCT GCCGCGCAAC TTGGCGCTTC CGCAGGTCGG GCGCTGA
|
|---|
| Protein sequence | MAADVPPASG SAHGTGRRTL HRIRVLTTVF AWLGGVLTIG SLVATGEGPL PIGVAALVAG
VLACWLRVPR DAWWIPPLEG VVAFAALLLL PDPQVVVGFV IGATVRRALY PEDAGFWAKS
AVVVGGYLTG LAASLLWGWG AIRPELLPTL LMPLAGMAVA AAALHEAARA VLRAESAQRG
AEHARATATA VLQASPIGLV LLDSGGVPVL HNERAQFLLD WAGQNGAAVP CPHGPNIAVC
EKGCRDADAE PVEVWVADRD RVLALHPVRV EQAGDEDRTL VAAVDISVRR RLEDELRHRS
ERDVLTGLTS RSHFLHLLDR ALRAGDVGLL VLDLDQFKEV NDTEGHDAGD QCLVAASRRI
RAAVEPDAVA ARLGGDEFAV LAPGLDEQAC GQLAKSVLAE LEKPWSDLGY DVRMQASIGV
AVSSAAAGVV GTAELLRDAD TAMYVAKREG GARARSFRRE MGEQALARQR DKLDLRAAIG
TDQLVLHYQP IVDLATTAIS GAEALVRWER PGRGLLGPGE FIGLAEQTGL IVPLGSSVLT
SACTQAAGWR AAGRELGVTV NVSTRQLSAP GFLAALAKSL DVSGLQASAL TIEVTESVWA
DEAAMRALMA VRETGVRVAL DDFGTGYSSL SYLHRYPFDV VKIDKSFTWA LGDTGRTAGV
VRCIIDLADV LGAVTVAEGI ETPEQAEWLR RAGCGFGQGF LFGRPDLPRN LALPQVGR
|
|---|
| |