Gene Amir_2500 details

Gene Information

• Locus tag: Amir_2500
• ID: 8326689
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Actinosynnema mirum DSM 43827
• Kingdom: Bacteria
• Replicon accession: NC_013093
• Strand: +
• Start bp: 2797651
• End bp: 2799537
• Gene Length: 1887 bp
• Protein Length: 628 aa
• Translation table: 11
• GC content: 75%
• IMG OID: 644943043
• Product: N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
• Protein accession: YP_003100284
• Protein GI: 256376624
• COG category: [V] Defense mechanisms
• COG ID: [COG3023] Negative regulator of beta-lactamase expression

Plasmid Coverage information

• Num covering plasmid clones: 20
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCGACCGG CCACCGCCGC GTTAGCCGCA ACACTGCTCG TCACCGGCCT GGTCACCGCG 
CCCGGCAACG CTTTCGCCGC GTCGGGCAAC GCCGACTACG CCGAGGCCGC GCGCGAGTTC 
GGGGTCCCGG AGCCGGTGCT CCTCGGCGTC GCCTACCTGG GCTCCCGCTG GGACTCGCAC 
GCCGGTTCGC CCAGCCGCGC GGGCGGCTAC GGGCCGATGC ACCTCACCGA CGCCGTCCCC 
GCCGAACCGG GGGAGCACCA CGACGCCGAG GACCCCAGGG GCGACCCGTC CCGGCCGCTG 
GGCGTCGACG GCCACGCCGA CCCCGCCGCC GGACGCCCCG GCACCCTGGC GCGGGCCGCC 
GAGCTGACCG ACCAGGACCC CGCGCGGCTG CGCACCGACC GGCGGGAGAA CATCCGCGGC 
GGCGCGGCCC TGCTCGCCTC GCTGCGCGGC GACGCCGGCG AGGACCTCGG CTCCTGGTAC 
GCCGCCGTCG CCCGCTACAG CGGCGCCGAC GACGACGCCA CCGCCCGCCG CTTCGCCGAC 
GACGTCTACG AGGTCGTCCG CGACGGCGCC ACCCGCGTCA CCGACACCGG CGACACCACC 
ACCCTGGCCG CGCACCCCGA CGTCCGCCCG GACACCGCCG CGCTCGACGC GCTCGGCCTG 
CCGCAGCCGC GCGCGGGCGC CGAGTGCCCC GCCCGGCTCG GCTGCGAGTG GGTGCCCGCG 
CCGTACGAGA ACTACGACCC GACCGACCCC GGCGCGTACG GCAACCACGA CCAGGCCGAC 
CGCCCCAACG ACCTGTCGAT CGACTACATC GTCATCCACG ACACCGAGAC CTCGTACGAG 
CAGACCCTCG AACTCGTCCA GGACCCCACG TACGTCAGCT GGCACTACAC GATCCGCTCC 
CGCGACGGGC ACGTCGCCCA GCACGTGGAG AACTCGGACG TCGCCTGGCA CGCGGGCAAC 
TGGTTCGTGA ACTCGCACGC CATCGGCATC GAGCACGAGG GCTACGCCGC GCAGGGCAGC 
TGGTACACCG AGGCCATGTA CCGCAACTCG GCCCGCCTGG TGCGCTACCT GGCCGACCGG 
TACGACGTGC CGCTCGACCG CGCGCACATC CTCGGCCACG ACAACGTCCC CGGCACCACG 
CCCGGAACCG TCGCCGGGAT GCACTGGGAC CCCGGTCCCT ACTGGGACTG GTCGCACTAC 
TTCGACCTGC TCGGCGCGCC GCTGCCCACC TGGGGCGCCC CGCACTCCGG CGTGGTCACG 
CCGAACCCGG ACTTCGCCAC CAACCGGCCG CGCTTCACCG GCTGCGAGAG CGCGGGCGTG 
GACTGCCCGT CGCGCGGCTC CACCTCGCTG CTGCTGCACA CCGAGCCCGC AGGCGACGCC 
CCGCTCGTCG CCGACGTCGG CCTGCGCCCG GACGGCTCGC CGAGCACCCG CGCGGTCAGC 
GACATCGGGG CCAGGATCGA CGCCGGGCAG CGGTTCGCGG TCGCCGAGCG GCGCGACGGG 
TGGACCGCGA TCTGGTACCT CGGGCAGAAG TCCTGGTTCC GCACCCCCGA GCCCCGGCAC 
GGCAGGCCGT CCGGGCCCGC GCTGGTCGTC ACGCCCAAAC CGGGCCTGGC GCAGGTCCCC 
GTCTACGGCC GCGCGTACCC CGAACAGGCG GCGTACGCGG GCACCGGGGC GCCGCCGCAG 
TCGGTGCTGC CGCTCCAGTA CGCGATGCCC GCCGGGCAGC GCTACGTGGT CGGCGACGTG 
GACCCGCCGG TGGACTACTA CTTCGCGCAG ACCTGGGACG GGCCGCACGT GGTGGTCAGC 
GGGCAGGACC GGTACCACCA GGTCTTCCTC GGGCACCGGG TCGCGTACGT GCGGGCCGCC 
GACGTGGACC TGAGCCTGGT CTGGTGA 

 

Protein sequence

MRPATAALAA TLLVTGLVTA PGNAFAASGN ADYAEAAREF GVPEPVLLGV AYLGSRWDSH 
AGSPSRAGGY GPMHLTDAVP AEPGEHHDAE DPRGDPSRPL GVDGHADPAA GRPGTLARAA 
ELTDQDPARL RTDRRENIRG GAALLASLRG DAGEDLGSWY AAVARYSGAD DDATARRFAD 
DVYEVVRDGA TRVTDTGDTT TLAAHPDVRP DTAALDALGL PQPRAGAECP ARLGCEWVPA 
PYENYDPTDP GAYGNHDQAD RPNDLSIDYI VIHDTETSYE QTLELVQDPT YVSWHYTIRS 
RDGHVAQHVE NSDVAWHAGN WFVNSHAIGI EHEGYAAQGS WYTEAMYRNS ARLVRYLADR 
YDVPLDRAHI LGHDNVPGTT PGTVAGMHWD PGPYWDWSHY FDLLGAPLPT WGAPHSGVVT 
PNPDFATNRP RFTGCESAGV DCPSRGSTSL LLHTEPAGDA PLVADVGLRP DGSPSTRAVS 
DIGARIDAGQ RFAVAERRDG WTAIWYLGQK SWFRTPEPRH GRPSGPALVV TPKPGLAQVP 
VYGRAYPEQA AYAGTGAPPQ SVLPLQYAMP AGQRYVVGDV DPPVDYYFAQ TWDGPHVVVS 
GQDRYHQVFL GHRVAYVRAA DVDLSLVW