Gene Amir_2467 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAmir_2467 
Symbol 
ID8326656 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameActinosynnema mirum DSM 43827 
KingdomBacteria 
Replicon accessionNC_013093 
Strand
Start bp2737302 
End bp2740496 
Gene Length3195 bp 
Protein Length1064 aa 
Translation table11 
GC content71% 
IMG OID644943012 
Productglycoside hydrolase family 2 sugar binding 
Protein accessionYP_003100253 
Protein GI256376593 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG3250] Beta-galactosidase/beta-glucuronidase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTTCCGCT CCGTCACACG GCTACTCACC CTGCTCTTGG CCCTCATCAC CGCTTCCGCC 
CTCCCCCTGC CCCTCGCCGC GGTCGCCTCG GCGGCGCCCG CGGTGCACGG GCTCAAGGGG
GAGTACTTCG CCATGTCCGC GCCGGGCGCG CGGGACTTCG CCGTCCCCGG CGGGTCCGCG
CTCGACCCGA ACGTCGAGTT CGGCAACCTC GTCCCGACCT TCCAGGCGCT GACCGGCAGG
GGCGAGCACA CCACCGCCCG CTGGACCGGG CGGCTCACCG CGCCCGCCAC CGCCGACTAC
ACGTTCCACG CGATCGGCGA CAACGGGTTC CGGCTGTTCC TGGACGGCGC GCCGGTCATC
GACCACTGGG TCGGCGACTG GGACGTCGAG CAGCGCAGCG CCCCGGTCCG CCTCGAGGCG
GGCGTGGCGC ACGAGTTCCG CCTGGAGCTG TTCCAGGACA CCGGTGGCGC GAACATGTTC
CTGCGGTGGT CCGCTCCGGG GGTGGCGAAG TCCATCGTCC CGGAGAGCGC GTTCACGCCG
CCCGCCGACT TCGAGGTCTA CCCGCTGGCG CTGAGCACGC CCGCGGGCGG CAGGACCGTG
CTGGCGGAGT TCGACGGGCG GATCACCGCG CTGGGCGACT TCCGCTCGCA CGTCGCGGTC
GAGGTCGACA CCGTGCCGTT CCCGATCAGC TCGGTGAACC GCAAGGACGA CGACAAGCTG
GTCATCACGC TCGGCGAGGC CGTGCTGAAG GGGCAGAGGA TCCGGCTGCG CTACGACGGC
GCGGGCGGGT TGGCGGTCGG CGGGAAGCCG GTGCCGAAGC TGTACCGGAG CGGGATCAAC
AACTCGGTCG AGCGGTTGAC GACGCCGTGG ACGAACAAGG TCAACAAGAA CCAGCCGCTG
CCGGAGTACC CGCGTCCCCA GCAGGAGCGG CGGAAGTGGT CGAACCTGAA CGGGCAGTGG
GAGTTCGCGG GCGCGGCGGC CGGTGAGCAG CCGGTGTTCG GGAAGGCGCT GGCGGAGAAG
ATCACCGTGC CTTACCCGGT CGAGTCGCTG CTGTCCGGGA TCGAGCGGCA CGAGGACCAC
ATGTTCTACC GGCGGACGTT CACCGTGCCG CAGGACTGGA ACGTGGGCCG GGGGCAGCGG
TTGAAGCTGA ACTTCGGCGC GGTCGACTAC CGGGCCACCG TCTGGGTGAA CGGCGTCAAG
GTGACCGAGC ACGAGGGCGG TTACACGGCG TTCACGGCTG ATGTGACGGA CGCGCTCGGC
GGGCGCAGGC AGCACGAGCT GGTCGTGGCG GTCACCGACA CGACCGGGGC CGAGCAGCCG
GTGGGCAAGC AGACGTCGAA CCCGAGCGGG ATCTTCTACA CGGCGTCGTC CGGGATCTGG
CAGACGGTGT GGTTGGAGCC GGTGCCGGAC CGGGCGATCG ACGACGTGGT GAGCACGCCG
GACATCGCGA CGGGGACGCT GTCGGTGACC GTTCGGTCGG CAACGTCACC CGGTGGTCGG
GTGACTGTCA CCGCGAAGGA GAAGGGCGGC CGGAAGGTCG GCAGCGTGAC GGGGGCGGCG
AACTCGGCGC TGACCGTGCC GGTGCCGAAG GCTCGGCTGT GGAGCCCGGA GGACCCGTAC
CTGTACGACC TGGAGGTCGT GCTGGAGGAC GGGCGGAGCA AGGACGTGGT GTCGAGCTAC
TTCGGGATGC GCTCGATCGG CGTCGCGCAG GTGAACGGGT TCCCGAAGCT GGTGCTCAAC
GGGAAGCCGG TGTTCTCGCT GGCGCAGCTG GACCAGGGGT TCTGGCCGGA CGGGTTGAAC
ACGGCGCCCA CGGACGCGGC GCTGGAGTTC GACCTGAAGG CGCAGAAGGA CCTCGGGTAC
AACGCGGTGC GCAAGCACAT CAAGGTGGAG CCCGCGCGGT GGTTCTACCA CGCGGACCGG
CTGGGGCTGC TGGTGTGGCA GGACTTCGTG TCCGGCACGT TCAACACCGA GGCGGGGCGC
ACGGCGTTCC AGGCGCAGGG CGCGGCCGTG GTCGAGCAGC ACCGCTCATC ACCCTCGGTG
ATCGGCTGGA TCGTGTTCAA CGAGGGTTGG GGTGAGTGGG ACCGGGAGGA GACCGGTCGC
ATCACCGAGC GCGTCCAGGC CTCGGACCCG TCGCGGGTGG TGAACGCGCA CAGCGGCGTG
AACTGCTGCG CGTCGAAGGG CGACTCCGGC AAGGGCGACG TGATCGACCA CCACGACTAC
AACAACGACT CGCCGCCGTG GCCGGACGCG ACGCGGGTGG CGATGGACGG CGAGCACGGC
GGTTTCACGC TGCGCACGCC GGGCCACCAG TGGCCGGGCG CGCCGACCGC GATCTACAGC
GGGGTGGCGA GCAAGGCGGA GCTGACCGCG AAGTACGTGT CGAACACCGA GCAGCACTAC
CTCCAGGCGG CGGGCGCCGA GCTGTCGGGG TCGGTGTACA CGCAGGTCAC GGACCTGGAG
ACCGAGCTGA ACGGGTTGTG GACGTACGAC CGGCGGGAGA TCAAGGTCGA TCCGGGTCCG
GTGCGCGAGA TCAACCGGAA GGTGATCGAG GCCGGTGCCG CGGCAGGCAC GTACCGCTAC
CCCGCCAAGG GCACGTGGTC TCTTGACGAG GGCCAGGGCG CGGTGGGCCG GGACACCTCG
GGTGGCGGCA GCGACCTGTC CGTGACCGGG GCGACGTGGG CGGAGGGCCT GCGCGGGACG
GCGCTGTCGT TCACCGGCTC GAACCAGTAC GCGCAGACGA GGACCCCGGT GGTGGACACC
AGGGCCGACT ACACGATCTC CGCCTGGGTG ACCCTGGACG GAGTGCCAAC CAACTGGGTG
ACCGCGGTGA GCCAGGACGG CCGCAGGCGC GAGAACCCGT TCTACCTCCA GTACGGCCAG
GGCGGCTTCG CCTTCAGCGG TCCGGGCGGC CACCGCGCGG TGTCGCAGCC GGTGACCCCG
GAGGCGGGCA GGTGGTACCA CCTGGTGGGC GTGCACGACG CGGCGAAGGC GGAGTTCCGG
CTGTACGTGG ACGGCGCTTT GGCGGGAACC ACGCAGGCGG GCGAGCCGCA CCTGAGCACG
GGGCCGCTGT CGATCGGGAG GGCGAAGTAC GCGGGCGGGA ACGTGGACTT CTGGAAGGGG
AAGGTGGACC AGGTCCAGGC GTTCGGCAAG GCCCTGACCG GGGCCGAGGT GGCGGAGCTG
CACTCGGCGC GGTGA
 
Protein sequence
MFRSVTRLLT LLLALITASA LPLPLAAVAS AAPAVHGLKG EYFAMSAPGA RDFAVPGGSA 
LDPNVEFGNL VPTFQALTGR GEHTTARWTG RLTAPATADY TFHAIGDNGF RLFLDGAPVI
DHWVGDWDVE QRSAPVRLEA GVAHEFRLEL FQDTGGANMF LRWSAPGVAK SIVPESAFTP
PADFEVYPLA LSTPAGGRTV LAEFDGRITA LGDFRSHVAV EVDTVPFPIS SVNRKDDDKL
VITLGEAVLK GQRIRLRYDG AGGLAVGGKP VPKLYRSGIN NSVERLTTPW TNKVNKNQPL
PEYPRPQQER RKWSNLNGQW EFAGAAAGEQ PVFGKALAEK ITVPYPVESL LSGIERHEDH
MFYRRTFTVP QDWNVGRGQR LKLNFGAVDY RATVWVNGVK VTEHEGGYTA FTADVTDALG
GRRQHELVVA VTDTTGAEQP VGKQTSNPSG IFYTASSGIW QTVWLEPVPD RAIDDVVSTP
DIATGTLSVT VRSATSPGGR VTVTAKEKGG RKVGSVTGAA NSALTVPVPK ARLWSPEDPY
LYDLEVVLED GRSKDVVSSY FGMRSIGVAQ VNGFPKLVLN GKPVFSLAQL DQGFWPDGLN
TAPTDAALEF DLKAQKDLGY NAVRKHIKVE PARWFYHADR LGLLVWQDFV SGTFNTEAGR
TAFQAQGAAV VEQHRSSPSV IGWIVFNEGW GEWDREETGR ITERVQASDP SRVVNAHSGV
NCCASKGDSG KGDVIDHHDY NNDSPPWPDA TRVAMDGEHG GFTLRTPGHQ WPGAPTAIYS
GVASKAELTA KYVSNTEQHY LQAAGAELSG SVYTQVTDLE TELNGLWTYD RREIKVDPGP
VREINRKVIE AGAAAGTYRY PAKGTWSLDE GQGAVGRDTS GGGSDLSVTG ATWAEGLRGT
ALSFTGSNQY AQTRTPVVDT RADYTISAWV TLDGVPTNWV TAVSQDGRRR ENPFYLQYGQ
GGFAFSGPGG HRAVSQPVTP EAGRWYHLVG VHDAAKAEFR LYVDGALAGT TQAGEPHLST
GPLSIGRAKY AGGNVDFWKG KVDQVQAFGK ALTGAEVAEL HSAR