Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Amir_2467 |
Symbol | |
ID | 8326656 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Actinosynnema mirum DSM 43827 |
Kingdom | Bacteria |
Replicon accession | NC_013093 |
Strand | - |
Start bp | 2737302 |
End bp | 2740496 |
Gene Length | 3195 bp |
Protein Length | 1064 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 644943012 |
Product | glycoside hydrolase family 2 sugar binding |
Protein accession | YP_003100253 |
Protein GI | 256376593 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG3250] Beta-galactosidase/beta-glucuronidase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTTCCGCT CCGTCACACG GCTACTCACC CTGCTCTTGG CCCTCATCAC CGCTTCCGCC CTCCCCCTGC CCCTCGCCGC GGTCGCCTCG GCGGCGCCCG CGGTGCACGG GCTCAAGGGG GAGTACTTCG CCATGTCCGC GCCGGGCGCG CGGGACTTCG CCGTCCCCGG CGGGTCCGCG CTCGACCCGA ACGTCGAGTT CGGCAACCTC GTCCCGACCT TCCAGGCGCT GACCGGCAGG GGCGAGCACA CCACCGCCCG CTGGACCGGG CGGCTCACCG CGCCCGCCAC CGCCGACTAC ACGTTCCACG CGATCGGCGA CAACGGGTTC CGGCTGTTCC TGGACGGCGC GCCGGTCATC GACCACTGGG TCGGCGACTG GGACGTCGAG CAGCGCAGCG CCCCGGTCCG CCTCGAGGCG GGCGTGGCGC ACGAGTTCCG CCTGGAGCTG TTCCAGGACA CCGGTGGCGC GAACATGTTC CTGCGGTGGT CCGCTCCGGG GGTGGCGAAG TCCATCGTCC CGGAGAGCGC GTTCACGCCG CCCGCCGACT TCGAGGTCTA CCCGCTGGCG CTGAGCACGC CCGCGGGCGG CAGGACCGTG CTGGCGGAGT TCGACGGGCG GATCACCGCG CTGGGCGACT TCCGCTCGCA CGTCGCGGTC GAGGTCGACA CCGTGCCGTT CCCGATCAGC TCGGTGAACC GCAAGGACGA CGACAAGCTG GTCATCACGC TCGGCGAGGC CGTGCTGAAG GGGCAGAGGA TCCGGCTGCG CTACGACGGC GCGGGCGGGT TGGCGGTCGG CGGGAAGCCG GTGCCGAAGC TGTACCGGAG CGGGATCAAC AACTCGGTCG AGCGGTTGAC GACGCCGTGG ACGAACAAGG TCAACAAGAA CCAGCCGCTG CCGGAGTACC CGCGTCCCCA GCAGGAGCGG CGGAAGTGGT CGAACCTGAA CGGGCAGTGG GAGTTCGCGG GCGCGGCGGC CGGTGAGCAG CCGGTGTTCG GGAAGGCGCT GGCGGAGAAG ATCACCGTGC CTTACCCGGT CGAGTCGCTG CTGTCCGGGA TCGAGCGGCA CGAGGACCAC ATGTTCTACC GGCGGACGTT CACCGTGCCG CAGGACTGGA ACGTGGGCCG GGGGCAGCGG TTGAAGCTGA ACTTCGGCGC GGTCGACTAC CGGGCCACCG TCTGGGTGAA CGGCGTCAAG GTGACCGAGC ACGAGGGCGG TTACACGGCG TTCACGGCTG ATGTGACGGA CGCGCTCGGC GGGCGCAGGC AGCACGAGCT GGTCGTGGCG GTCACCGACA CGACCGGGGC CGAGCAGCCG GTGGGCAAGC AGACGTCGAA CCCGAGCGGG ATCTTCTACA CGGCGTCGTC CGGGATCTGG CAGACGGTGT GGTTGGAGCC GGTGCCGGAC CGGGCGATCG ACGACGTGGT GAGCACGCCG GACATCGCGA CGGGGACGCT GTCGGTGACC GTTCGGTCGG CAACGTCACC CGGTGGTCGG GTGACTGTCA CCGCGAAGGA GAAGGGCGGC CGGAAGGTCG GCAGCGTGAC GGGGGCGGCG AACTCGGCGC TGACCGTGCC GGTGCCGAAG GCTCGGCTGT GGAGCCCGGA GGACCCGTAC CTGTACGACC TGGAGGTCGT GCTGGAGGAC GGGCGGAGCA AGGACGTGGT GTCGAGCTAC TTCGGGATGC GCTCGATCGG CGTCGCGCAG GTGAACGGGT TCCCGAAGCT GGTGCTCAAC GGGAAGCCGG TGTTCTCGCT GGCGCAGCTG GACCAGGGGT TCTGGCCGGA CGGGTTGAAC ACGGCGCCCA CGGACGCGGC GCTGGAGTTC GACCTGAAGG CGCAGAAGGA CCTCGGGTAC AACGCGGTGC GCAAGCACAT CAAGGTGGAG CCCGCGCGGT GGTTCTACCA CGCGGACCGG CTGGGGCTGC TGGTGTGGCA GGACTTCGTG TCCGGCACGT TCAACACCGA GGCGGGGCGC ACGGCGTTCC AGGCGCAGGG CGCGGCCGTG GTCGAGCAGC ACCGCTCATC ACCCTCGGTG ATCGGCTGGA TCGTGTTCAA CGAGGGTTGG GGTGAGTGGG ACCGGGAGGA GACCGGTCGC ATCACCGAGC GCGTCCAGGC CTCGGACCCG TCGCGGGTGG TGAACGCGCA CAGCGGCGTG AACTGCTGCG CGTCGAAGGG CGACTCCGGC AAGGGCGACG TGATCGACCA CCACGACTAC AACAACGACT CGCCGCCGTG GCCGGACGCG ACGCGGGTGG CGATGGACGG CGAGCACGGC GGTTTCACGC TGCGCACGCC GGGCCACCAG TGGCCGGGCG CGCCGACCGC GATCTACAGC GGGGTGGCGA GCAAGGCGGA GCTGACCGCG AAGTACGTGT CGAACACCGA GCAGCACTAC CTCCAGGCGG CGGGCGCCGA GCTGTCGGGG TCGGTGTACA CGCAGGTCAC GGACCTGGAG ACCGAGCTGA ACGGGTTGTG GACGTACGAC CGGCGGGAGA TCAAGGTCGA TCCGGGTCCG GTGCGCGAGA TCAACCGGAA GGTGATCGAG GCCGGTGCCG CGGCAGGCAC GTACCGCTAC CCCGCCAAGG GCACGTGGTC TCTTGACGAG GGCCAGGGCG CGGTGGGCCG GGACACCTCG GGTGGCGGCA GCGACCTGTC CGTGACCGGG GCGACGTGGG CGGAGGGCCT GCGCGGGACG GCGCTGTCGT TCACCGGCTC GAACCAGTAC GCGCAGACGA GGACCCCGGT GGTGGACACC AGGGCCGACT ACACGATCTC CGCCTGGGTG ACCCTGGACG GAGTGCCAAC CAACTGGGTG ACCGCGGTGA GCCAGGACGG CCGCAGGCGC GAGAACCCGT TCTACCTCCA GTACGGCCAG GGCGGCTTCG CCTTCAGCGG TCCGGGCGGC CACCGCGCGG TGTCGCAGCC GGTGACCCCG GAGGCGGGCA GGTGGTACCA CCTGGTGGGC GTGCACGACG CGGCGAAGGC GGAGTTCCGG CTGTACGTGG ACGGCGCTTT GGCGGGAACC ACGCAGGCGG GCGAGCCGCA CCTGAGCACG GGGCCGCTGT CGATCGGGAG GGCGAAGTAC GCGGGCGGGA ACGTGGACTT CTGGAAGGGG AAGGTGGACC AGGTCCAGGC GTTCGGCAAG GCCCTGACCG GGGCCGAGGT GGCGGAGCTG CACTCGGCGC GGTGA
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Protein sequence | MFRSVTRLLT LLLALITASA LPLPLAAVAS AAPAVHGLKG EYFAMSAPGA RDFAVPGGSA LDPNVEFGNL VPTFQALTGR GEHTTARWTG RLTAPATADY TFHAIGDNGF RLFLDGAPVI DHWVGDWDVE QRSAPVRLEA GVAHEFRLEL FQDTGGANMF LRWSAPGVAK SIVPESAFTP PADFEVYPLA LSTPAGGRTV LAEFDGRITA LGDFRSHVAV EVDTVPFPIS SVNRKDDDKL VITLGEAVLK GQRIRLRYDG AGGLAVGGKP VPKLYRSGIN NSVERLTTPW TNKVNKNQPL PEYPRPQQER RKWSNLNGQW EFAGAAAGEQ PVFGKALAEK ITVPYPVESL LSGIERHEDH MFYRRTFTVP QDWNVGRGQR LKLNFGAVDY RATVWVNGVK VTEHEGGYTA FTADVTDALG GRRQHELVVA VTDTTGAEQP VGKQTSNPSG IFYTASSGIW QTVWLEPVPD RAIDDVVSTP DIATGTLSVT VRSATSPGGR VTVTAKEKGG RKVGSVTGAA NSALTVPVPK ARLWSPEDPY LYDLEVVLED GRSKDVVSSY FGMRSIGVAQ VNGFPKLVLN GKPVFSLAQL DQGFWPDGLN TAPTDAALEF DLKAQKDLGY NAVRKHIKVE PARWFYHADR LGLLVWQDFV SGTFNTEAGR TAFQAQGAAV VEQHRSSPSV IGWIVFNEGW GEWDREETGR ITERVQASDP SRVVNAHSGV NCCASKGDSG KGDVIDHHDY NNDSPPWPDA TRVAMDGEHG GFTLRTPGHQ WPGAPTAIYS GVASKAELTA KYVSNTEQHY LQAAGAELSG SVYTQVTDLE TELNGLWTYD RREIKVDPGP VREINRKVIE AGAAAGTYRY PAKGTWSLDE GQGAVGRDTS GGGSDLSVTG ATWAEGLRGT ALSFTGSNQY AQTRTPVVDT RADYTISAWV TLDGVPTNWV TAVSQDGRRR ENPFYLQYGQ GGFAFSGPGG HRAVSQPVTP EAGRWYHLVG VHDAAKAEFR LYVDGALAGT TQAGEPHLST GPLSIGRAKY AGGNVDFWKG KVDQVQAFGK ALTGAEVAEL HSAR
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