| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_2425 |
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| Symbol | |
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| ID | 8326614 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Actinosynnema mirum DSM 43827 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013093 |
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| Strand | - |
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| Start bp | 2693123 |
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| End bp | 2694754 |
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| Gene Length | 1632 bp |
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| Protein Length | 543 aa |
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| Translation table | 11 |
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| GC content | 74% |
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| IMG OID | 644942970 |
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| Product | Cholesterol oxidase |
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| Protein accession | YP_003100211 |
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| Protein GI | 256376551 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
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| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.939121 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGACCCGGT CCGTTTCCCG CAGATCCTTC CTCGCAGGCG CAGGCACGGC GTTGGGCGCG
ACCGCGTTCA GCGGCGGCGC TTCAGCGTCG GGCAGCACGG CGCCAGGCGC CCCGGCGTCG
GGCCGCTCCC CCGCCGGGAT CCCCGACGGG GCGCGCGTGC CCGCGCTGGT CGTCGGCTCC
GGGTACGGCG GCGCGGTGGC CGCGCTGCGG CTGGCGCAGG CGGGCGTGCC GGTGCACGTG
GTCGAGAAGG GCCGGTCGTG GGACGAGCCG GGGTGGGACG GCAAGGTCTT CGCGAACATG
CTCAACCCCG ACGAGCGCTC GTACTGGCTG CGCACCTGGA CCAAGCAGCC GCTCAGCAAC
TTCCTCGGCC TGCCGGTGGA CCGCGCCGTC CCGCGCCGCA CCGGAATCCT GGACGCCGAG
GAGTTCGCCG GGATCACCGT CTACCAGGGG CGGGGCGTGG GCGGCGGGTC GCTGGTCAAC
GGGGGCATGG CGGTGACGCC CCGGCGGGAG CGGTTCGCGG CGGTCCTGCC GGGCGTGGAC
CCCGAGGAGA TGTACTCGAC GTACTACCCG CTGGCGAACG CCGAGCTGGG CACCGGGCTG
GTCGACCCGG ACTGGTGGGA GCAGGCCGAG TGCTACCGGT ACGCCAGGGT GGGGCGGGCG
CAGGCGCAGC GGTCCGGGTT CCCGTTCGAG CTGGTGCCCG GCGTGTACGA CTGGGCGCAC
CTGGAGCGCG AGGAGGCCGG GACCGCGCCC CGGTCGGCGC TGGCCGCCGA GGTGATCTAC
GGCAACAACC ACGGGAAGCT GTCGCTGCCC AGGACGTACC TGGCGCGGGC GCTGGCCACC
GGGCGGGTGA CGATCTCGGC GCTGCACGAG GTGACGAGCG TGCGGGCGGT CGGCGGCGGG
TACGAGGCGC TGCTCGACGT GCTGGACACG AACGGGCGGG TGACGTCCAC CAAGCGGGTG
GAAGCGGAGC GGGTGTTCTT CGCGGCCGGG AGCGTGGGGA CGAGCAAGCT GCTGACCCGG
TTGCGGGACA CCGGGGCGCT GCCCGCGCTG AGCCCGGAGG TCGGGCTGGG GTGGGGGGAG
AACGGGAACG TGATGGTGGG GCGGGCGAAC AAGGCGTCCG ACCCGACCGG GGCGCTCCAG
TCGTGCATCC CGACCGGCGG GATCGACAAC TGGGCGGCGG GCGGGGCGTT CGCCGAGGTC
GCGCCGCTGC CGACCGGGGT CGAGACGTTC ACGTCGTTCT ACCTGGCGAT CACGGCCAAC
CCGAGGCGCG GGCGGTTCAC CTGGAACCCG GAGGCGGGGC GGGTCGAGCT GGACTGGCGG
CAGGAGTGGA AGCAGCCGTC GGTCGACATG GCGCGGACGA TCTTCGACCG GATCAACTCG
GTCGAGGGGA CGGTGTACCG GGCGGACCTG TTCGGGGCGG GGAAGGTGTG GGGCGACGGG
CTGACGTACC ACCCGCTGGG CGGGGTGGTG CTGGGGCGGG CGACGGACGG GCACGGGCGG
CTGGCGGGGT ACCGGGGGCT GTACGTGGTG GACGGGTCGC TGATTCCGGG GAACACGAGC
GTGAACCCGT TCGTGACGAT CACGGCGCTG GCGGAGCGGA ACCTGGCCCG GATCGTGGCG
CGGGACCTGT AG
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| Protein sequence | MTRSVSRRSF LAGAGTALGA TAFSGGASAS GSTAPGAPAS GRSPAGIPDG ARVPALVVGS
GYGGAVAALR LAQAGVPVHV VEKGRSWDEP GWDGKVFANM LNPDERSYWL RTWTKQPLSN
FLGLPVDRAV PRRTGILDAE EFAGITVYQG RGVGGGSLVN GGMAVTPRRE RFAAVLPGVD
PEEMYSTYYP LANAELGTGL VDPDWWEQAE CYRYARVGRA QAQRSGFPFE LVPGVYDWAH
LEREEAGTAP RSALAAEVIY GNNHGKLSLP RTYLARALAT GRVTISALHE VTSVRAVGGG
YEALLDVLDT NGRVTSTKRV EAERVFFAAG SVGTSKLLTR LRDTGALPAL SPEVGLGWGE
NGNVMVGRAN KASDPTGALQ SCIPTGGIDN WAAGGAFAEV APLPTGVETF TSFYLAITAN
PRRGRFTWNP EAGRVELDWR QEWKQPSVDM ARTIFDRINS VEGTVYRADL FGAGKVWGDG
LTYHPLGGVV LGRATDGHGR LAGYRGLYVV DGSLIPGNTS VNPFVTITAL AERNLARIVA
RDL
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