Gene Amir_2380 details

Gene Information

• Locus tag: Amir_2380
• ID: 8326569
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Actinosynnema mirum DSM 43827
• Kingdom: Bacteria
• Replicon accession: NC_013093
• Strand: +
• Start bp: 2640465
• End bp: 2642477
• Gene Length: 2013 bp
• Protein Length: 670 aa
• Translation table: 11
• GC content: 73%
• IMG OID: 644942925
• Product: PAS/PAC sensor signal transduction histidine kinase
• Protein accession: YP_003100166
• Protein GI: 256376506
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG5002] Signal transduction histidine kinase
• TIGRFAM ID: [TIGR00229] PAS domain S-box

Plasmid Coverage information

• Num covering plasmid clones: 0
• Plasmid unclonability p-value: 0.000000186709
• Plasmid hitchhiking: No
• Plasmid clonability: unclonable

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGATACCGG TGGTGCACGA GGACCAGCTC AGGCCCGGTT CCCCCCTGCG CAGGGCCGCC 
CTGTTCGCCG CGCTCTACGC CGCGGCCTCG GCCCTCGGCG GCCTGGTGGT CGCCGACGGC 
GCAGTCCTCA ACCAGGTCTG GCCCGCTTCC GGCGTCCTCG CGGTCTGGTT CTGCCTCCAG 
CGCGGCTGCG CCCGCCGCTG GGTGGACCTG GCCGCGCTGA CCGCCGTCAC CCTGGCCTTC 
GCCATCCCGA CCGCCGGGTT CCCGATCGCC CTGGTCTGCC TGATCACCAC CGCGGCCCAG 
GGCGAGCTCT TCGCCCGCCT CCTGGCCCGC CTGCGCCCCG ACCTGTGGGG CGCGGGCGGC 
ACCCGCCCCT TCGGCCGGAC CTCGGACCTG GGCGCCCTTC TCACCGCCGC CGTGGCGTCC 
ACCACCGCGG GCGCCGTCCT GTGCGTCCTG GGCGTGCAAC TGGCAGGCGG CCACCCCGCC 
TGGTCCGAGG CCCTGGTCTG GACCGCCCGC AACACCGCCA GCATCCTGCT CGTGGGCACC 
GCGGGCCTCT GCGTGAGCCG AGCCCGAGCC GCGAACCGCG CAACCCCACG CCGCCTGCGC 
CTGAACACCG CGGGCCTCCT GGAAGGCGCA GCCGTGGTCC TGGGCTCGGC CACCGCCTAC 
CTGATCGCCT TCGTCTACAA CCAGGGCCTC CCCCTGGCCT TCCCCCTGCT CCTGGTCACC 
GTCTGGGCCG CCCTCCGAAT GCCCACCACC TTCGTGGCCC TGCACGACCT GGCCCTGGGC 
GGCGCAGCGG TCCTGTTCAC CCTGCACGGC CACGGCCCGT TCGCGTCCAT CACCTCCCCG 
GTGACACGCG TCCTCGTCGT GCAGGTCTTC ATCCTCATGG TCGCCGTGGT GGGCCTGACC 
CTCGCCCTGG GCCGAGACGA ACGCGCCGCC CTCCTGGCCG AGCTGGCCAA GGGCCGCCGG 
GACGCCTCCA ACCAGGCCGA CCTGCTGGCC GCCATCATCG ACTCCATGGC CGACGCCCTG 
GTGGTCGTGG ACCGCGAGGG CACCCCCCGG CTCCGCAACC CGGCAGCCCG CCGCCTCCTG 
GGCGACGACC CCGCGGCCGT GACCCTCACC CGCCCGGACG GCACCCCCGT CGCGAACACC 
GACCTCCCGC ACGCGGTGGC CCTCTCAGGC CGCCGCCAGT CCCACGGCGA AGACCTCCTC 
CTGCACACCA CGTCAACCCC GGAAACCCGA ATCGCCCACA TCACCGCCAC CGCCCTCCCC 
GGCAACGAGG CGGCGGTGGT CCTCTTCCAC GACGTCACCG CAGAACGCAG GCACCGCGAC 
GAACTGGCCA ACTTCGCAGG CTCGGTGGCC CACGACCTCC TGACCCCCCT CACCACGGCC 
CACGGCTGGA CCGACCTGAC CGCAAGCCTC ATCGAGGACC ACCCCACCCA CCCGGCCGCC 
CCGGAGCTCA CCGACGCCAT CGACCGCGTG GCCAGGGCGA ACACCAGGAT GAGCACCCTC 
ATCACCGACC TGCTGGCCTA CACCACGGCA AGGGACGCCA CCGTCAACCC GGTCACGATC 
GACCTGGGCG CCCTGGTGGC GGAAGTGGCA GCCGCCCGAG CCGACGCCGC AACCGCCACA 
GGCGCACCCC CACCCAGCTT CCACATCAGC GACCTGCTCC CGGTCCGAGC CGACCCGGTC 
CTGCTCCGCC AGCTGATCGA CAACCTGCTC GGCAACGCGA TCAAGTACAC CGCCGAGGGC 
GTCCCCCCAC GCATCACCAT CGACTCCCAC GCAGACCGAG CCGGAGCCGT GCACGTGGAC 
GTGGTAGACA ACGGCATCGG CATCCCCCCA GGCCAACACG GCGCGATCTT CGACAACTTC 
CACCGAGCCC ACCGCGCCAG CGGAAGACTG GGCACCGGCC TGGGCCTGGC GATCTGCAAG 
CGCATAGTCG AACGCCACGG CGGAGAGATC ACCGCCCAGG ACAACCCAGG CGGCGGCTCC 
CGCTTCAGCT TCACCCTGCC CGCAGTGAGC TGA 

 

Protein sequence

MIPVVHEDQL RPGSPLRRAA LFAALYAAAS ALGGLVVADG AVLNQVWPAS GVLAVWFCLQ 
RGCARRWVDL AALTAVTLAF AIPTAGFPIA LVCLITTAAQ GELFARLLAR LRPDLWGAGG 
TRPFGRTSDL GALLTAAVAS TTAGAVLCVL GVQLAGGHPA WSEALVWTAR NTASILLVGT 
AGLCVSRARA ANRATPRRLR LNTAGLLEGA AVVLGSATAY LIAFVYNQGL PLAFPLLLVT 
VWAALRMPTT FVALHDLALG GAAVLFTLHG HGPFASITSP VTRVLVVQVF ILMVAVVGLT 
LALGRDERAA LLAELAKGRR DASNQADLLA AIIDSMADAL VVVDREGTPR LRNPAARRLL 
GDDPAAVTLT RPDGTPVANT DLPHAVALSG RRQSHGEDLL LHTTSTPETR IAHITATALP 
GNEAAVVLFH DVTAERRHRD ELANFAGSVA HDLLTPLTTA HGWTDLTASL IEDHPTHPAA 
PELTDAIDRV ARANTRMSTL ITDLLAYTTA RDATVNPVTI DLGALVAEVA AARADAATAT 
GAPPPSFHIS DLLPVRADPV LLRQLIDNLL GNAIKYTAEG VPPRITIDSH ADRAGAVHVD 
VVDNGIGIPP GQHGAIFDNF HRAHRASGRL GTGLGLAICK RIVERHGGEI TAQDNPGGGS 
RFSFTLPAVS