Gene Amir_2378 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAmir_2378 
Symbol 
ID8326567 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameActinosynnema mirum DSM 43827 
KingdomBacteria 
Replicon accessionNC_013093 
Strand
Start bp2638942 
End bp2639841 
Gene Length900 bp 
Protein Length299 aa 
Translation table11 
GC content75% 
IMG OID644942923 
Productshort-chain dehydrogenase/reductase SDR 
Protein accessionYP_003100164 
Protein GI256376504 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000000241123 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGGAGCGCA GCACCACCGT CATGACCGGG GCCAGCAGGG GCATCGGCCT CGTCGCCGCC 
CAGCACCTGC TCGCCACCGA CCGCGACCTC CAGCTCGTGG TCCTCGGCCG GGTCCCCGCC
GAGCTCGCGG GCCCCAGGGT CACCGCCATC CCCGCCGACC TGTCCTCGCT GGCCGACGTG
CACCGCGCCG CCACCGAGGT CACCACCCTC CTGGACGCGG GCCTGCCGCC GCTGCGCGGC
CTGATCGCCA ACGCGGGCAT CCAGCACGCC GACGCCCGCA CCACCACCGT CGACGGCCAC
GAGGCCACGT TCGCGGTCAA CGTCATCGCG AACCACCTGA TCCTGCGCGT GCTCGCCGAC
CGCTTCACCA CCCCGGCCCG CGTCGTGATC ACCACCAGCG ACACCCACTT CGGCGACCTC
AAGCACAACC TCGGCATGGT CCCCGCCCCG CGCTGGCGCG ACCCCGAGGT GCTCGCCGCG
CCGGGCGCGT TCCCCAAGCC CGACAGCGCC CCCGCGGGCC GCACCGCCTA CTCCACCAGC
AAGCTCGCCA CCGTCCACCA GGTGCACGAG CTGGCCCGCA GGCTCCCGCC CGGCGTCGAG
GTCCTCGCCC ACAACCCCGG CTTCGTCCCC GGAACGGGCC TGACCCGCAA CGCGGGCCCC
GCCGTCCGCT TCACCGCCAA GCACTTCCTC CCCCTGCTCG CCAGGACCCC GATCGCCACC
GACGTGACCA CGGCGGGCCG CCACCTCGCC GAGTCCCTCA CCCGCCCGAT CACCTCCGGC
GACTACGTCG ACCGCGACCA CGTCGCCGAC TCCGCCCCCC AGTCCTACGA CCGGGACCGC
GAGGCCCGCC TGTGGGCGGT GCTGGACGAG CTGTGCGGGA CCTGGGTCCC TGCCCGGTAG
 
Protein sequence
MERSTTVMTG ASRGIGLVAA QHLLATDRDL QLVVLGRVPA ELAGPRVTAI PADLSSLADV 
HRAATEVTTL LDAGLPPLRG LIANAGIQHA DARTTTVDGH EATFAVNVIA NHLILRVLAD
RFTTPARVVI TTSDTHFGDL KHNLGMVPAP RWRDPEVLAA PGAFPKPDSA PAGRTAYSTS
KLATVHQVHE LARRLPPGVE VLAHNPGFVP GTGLTRNAGP AVRFTAKHFL PLLARTPIAT
DVTTAGRHLA ESLTRPITSG DYVDRDHVAD SAPQSYDRDR EARLWAVLDE LCGTWVPAR