| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_2287 |
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| Symbol | |
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| ID | 8326476 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Actinosynnema mirum DSM 43827 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013093 |
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| Strand | - |
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| Start bp | 2543824 |
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| End bp | 2546346 |
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| Gene Length | 2523 bp |
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| Protein Length | 840 aa |
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| Translation table | 11 |
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| GC content | 78% |
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| IMG OID | 644942832 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_003100073 |
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| Protein GI | 256376413 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.294241 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGGGCACGC GCGCGCCGGA CGTTCCGGCG CGCGCGGACG TGAAGACCGA ACGCACCGAA
CGCAGAGCCA CCGGAGAGGG TGACATGACC GTTCCGCTTT CCCGGGAGGC GGAAGCGCTC
CGCGAGCGCG CGGAGCTGGC TGGGACGTGG GCGGGGCTTC TGGCCGGGCA CTCGGGCGGC
AGGGTTCCGG GGCAGGTGCT GGAGCGGGCG CTGCTCGGCG AGGTCGAGCG GCTGTGCGCG
GGCGCGCTGG GCATCGGCGA CGGGGACGAG GACGACGTCG AGGACGACCC GGACGGCGCG
GGGCCGGGCG TGGCGCGGGG CAGCGCGGAC CTGGCCGTCG CGGCGGGCCG GACCACGGGC
GGCGTGCTCG CGGAGCTGAC CGAGAACCCC GAGGCGCTGC GGGTGACGCT GGAGCTGCTG
AGCACCGGGT TACCGGGGCT GGCGACCCTG TCGGCGGTCG GCAGCCGCGT CCCCTCGGTG
CTGGCGGCGC TCGCCGCCGG GTTCGCCGAG CAGGCGGTGG CGCACGGCGC GGCGAGGTCC
GCGCGCACCC CGAGGCCCCG CAGGGAGAGC GTCCCCCTGG CGACCCCGCG CGGCACGGCG
GTCCGGGTCC CGGTCGACGG GCCGCCCACC GCACCGCCCG CGCCCGCCGC GCCGGAGGAC
CCGGACGAGG ACGACACAGA CCAGGAGCCG CACCACTGCT CGCCCGCCGA CGACGACGTC
GACGACCTGA GCGACGCCGA GGCCGGGGGC GAGCCGCCGA CCGGCGCGAG GACCGCTCCC
GACGCGCCCG ACCACCACCC GGTCGACAGC GCCTCGTCCG CCGGGCCGGA CCGCACCGGC
GCCGCCCCGC CCGACGACGA CCTCCCCCGC GGCCCGGCGG CCGGACCCCC GGTGGCCGAG
TCGGTGCTGC TCGCGGCGAA GGCCAGGATC GTGGAGGAGG CCGCCCGGAT CGGGGTGGCC
TCGGTGACGT TCGAGGGCAG CGTCCTGGAG GCCAACGACG CGCTCGCGGA CATCCTCAAC
CGCGCCCACG GCACGCTGAC CGGCGTCGAC CTGCTCGAAC TCGTGCACCC GGCGGACCGG
GGCGTGGTCG TGGCCGACCT GGCGGGCCTG GCCTGCGGCG GCACGTCGGC GCTGTCCGGG
CAGCGCAGGC TGGTCCGCCC GGACGGCGAG GTCGCGTGGG CCGCGCTGAC CACCGCGCCG
CTGCGGCCAC CCGGTCGGGA GCCCTACGCG GTGGTGGTCG TGGAGGACCG GACCGACGTG
AGCCTGCTCC AGGGGCAGCT CAACCACCAG TCGCTGCACG ACGTGCTGAC CTGGCTGCCG
AACCGGCAGT ACTTCACCAG CAGGTTGGAG CGGGCGCTGC GCACGGCCGA CCCGGCGACC
GGCGTCACCG TCTACCACCT GGACCTGGAC GGGTTCTCCC GGATCAACGG CGGGCTCGGC
CGGGCGGTCG GTGACCACGT GCTCAAGACC GCCGCGTCCC GGCTGTTCGA GGCGGTGCCC
GGCGAGAACG CGATGATCGC GCGGTTCGGG GCGGACGAGT TCGCGGTGCT CGTGGAGAAC
GTCGCGGGCA CGCCGGACGT GGTGACCACG GTGCGGCGGA TCAACGAGCG GCTCGGGGAA
CCGCTGGAGG TGGCGGGGCA GGAGATCGCG CTGTCCGCCA CGATCGGGGT GGTGCACCGG
CCCGCGCCGG GGACCCCGCC CGCCGAGCTG CTGGAGGCGG CCGACCTCGC GCTGCGGCGG
GCGCGCGGGC TGGGCAGCAG GCAGTGGGCG CTGGCCGATC CGGAGCTCGA CGGCGTGGAC
CGGCGGGACT TCACCCTCGC GGCGACCATG CCCGGCGCGT GGCGGCGCGG GGAGCTGGAG
GTCCGGTACC GGCCGGTGGT GCGGTTGGCG GACGCGGAGG TGGTGGCGGC CGAGGCGGTG
CTGCGGTGGC GGCACCCGGT GCTCGGGGTG CTGCCGCACG GCCGGTGCGC GCGGTTGGCC
GAGGAGACCG GGTTCGCGGT GCCGCTGGGG GCGCTGGTGC TGCGGGCGGC GTGCGAGCGG
GCCGCCGAGT GGGCGCGGGA CGGGGCGGAG CTGCCGGTGC GGGTGGCGCT CAGCGGTGAG
CAGGCCGCGG ACCAGGACCT GGTGGGGTCG GCGCTGCGGG CGCTGGAGGA GACCGGGCTG
CCTCGGCGGC TGCTGCGGGT CGCGGTGCCC GCGCGGGTGC TGTTCGAGCG GGACGAGGCC
GCGGACAACC TGCGGGTGCT CGCCGACGCG GGCGTGGGCG CGGAGGTCGA CGACTTCCCG
GTGGCACCGG GCGAGCTGGC CGCGCTGGAA GCGTTCCCGG TGCGGGCGGT CCGGGTGCGC
GCCGGGCTGG AGGTGACGCA CCCGAGCGCG GTGAAGGCGC TGACCGAGCT GCTCGGGGTG
CTCAGGGAGG CGGGGGTGGA GGTGTCCGTC GACGGGCTGA CCACGGCCGA GCGGAGCCGG
TGGTGGCGCG AGGTGGGCGC GGAGACCGGG GCCGGGCCGC TGTTCCCGAA GCGGGTGCGG
TGA
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| Protein sequence | MGTRAPDVPA RADVKTERTE RRATGEGDMT VPLSREAEAL RERAELAGTW AGLLAGHSGG
RVPGQVLERA LLGEVERLCA GALGIGDGDE DDVEDDPDGA GPGVARGSAD LAVAAGRTTG
GVLAELTENP EALRVTLELL STGLPGLATL SAVGSRVPSV LAALAAGFAE QAVAHGAARS
ARTPRPRRES VPLATPRGTA VRVPVDGPPT APPAPAAPED PDEDDTDQEP HHCSPADDDV
DDLSDAEAGG EPPTGARTAP DAPDHHPVDS ASSAGPDRTG AAPPDDDLPR GPAAGPPVAE
SVLLAAKARI VEEAARIGVA SVTFEGSVLE ANDALADILN RAHGTLTGVD LLELVHPADR
GVVVADLAGL ACGGTSALSG QRRLVRPDGE VAWAALTTAP LRPPGREPYA VVVVEDRTDV
SLLQGQLNHQ SLHDVLTWLP NRQYFTSRLE RALRTADPAT GVTVYHLDLD GFSRINGGLG
RAVGDHVLKT AASRLFEAVP GENAMIARFG ADEFAVLVEN VAGTPDVVTT VRRINERLGE
PLEVAGQEIA LSATIGVVHR PAPGTPPAEL LEAADLALRR ARGLGSRQWA LADPELDGVD
RRDFTLAATM PGAWRRGELE VRYRPVVRLA DAEVVAAEAV LRWRHPVLGV LPHGRCARLA
EETGFAVPLG ALVLRAACER AAEWARDGAE LPVRVALSGE QAADQDLVGS ALRALEETGL
PRRLLRVAVP ARVLFERDEA ADNLRVLADA GVGAEVDDFP VAPGELAALE AFPVRAVRVR
AGLEVTHPSA VKALTELLGV LREAGVEVSV DGLTTAERSR WWREVGAETG AGPLFPKRVR
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