| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_2243 |
|---|
| Symbol | |
|---|
| ID | 8326432 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Actinosynnema mirum DSM 43827 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013093 |
|---|
| Strand | - |
|---|
| Start bp | 2480214 |
|---|
| End bp | 2480768 |
|---|
| Gene Length | 555 bp |
|---|
| Protein Length | 184 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 644942788 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_003100029 |
|---|
| Protein GI | 256376369 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4221] Short-chain alcohol dehydrogenase of unknown specificity |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.000317715 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGATGTGC GGCGGCGGGA GGACGTGCGG GAGATGGTCG GTGCTGCGGT GGAGCGGTTT
GGCGGGGTGG ATGTGCTGGT CGCCAATGCG GGGGTGATGC CGGTTTCTGC CGTGGACGAG
CTTCGGGTGG ACGACTGGGA CGCCATGGTC GACACGAACC TGAAGGGGGT GTTGCACGGG
GTGGCTGCGG CGTTGCCGGT GTTCCGGGAG CAGGGGCGGG GGCACTTCGT GCACGTCGCG
TCCACTGCGG CGCATCGGGT TGTGCCTGCT CAGGCCGTGT ACTCGGCTAC CAAGGCCGCG
GTTCGGACGT TTTCCGAGGG GTTGCGGCAG GAGGCCGGGG AGCGGTTGCG GGTCACCGTG
GTGTCGCCAG GGTTCACGGC CACCTCGTTC GCCGAGCACG TCACCAGTCC TGCGGCCCGT
GAGGGGTTGC GGGCGTTGGG TGAGGACGTG GCGATGCCGC CGAGCGCGGT GGCTGAGGCG
ATCGCCTACG CCATCGGGCA GCCGGATGGG GTGGACGTCG GGGAGATCGT GGTTCGGCCC
ACCGCTCAGG GGTGA
|
|---|
| Protein sequence | MDVRRREDVR EMVGAAVERF GGVDVLVANA GVMPVSAVDE LRVDDWDAMV DTNLKGVLHG
VAAALPVFRE QGRGHFVHVA STAAHRVVPA QAVYSATKAA VRTFSEGLRQ EAGERLRVTV
VSPGFTATSF AEHVTSPAAR EGLRALGEDV AMPPSAVAEA IAYAIGQPDG VDVGEIVVRP
TAQG
|
|---|
| |